<!DOCTYPE html><html lang="en"> <head><meta charset="utf-8"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Variants - Sid Sijbrandij&#39;s Osteosarcoma Data</title><meta name="description" content="182 somatic variants identified in this patient — gene, location, protein change, vaccine inclusion, and VAF trajectories over time."><link rel="canonical" href="https://osteosarc.com/variants/"><link rel="icon" href="/favicon.ico" sizes="any"><!-- Open Graph --><meta property="og:type" content="website"><meta property="og:url" content="https://osteosarc.com/variants/"><meta property="og:title" content="Variants - Sid Sijbrandij's Osteosarcoma Data"><meta property="og:description" content="182 somatic variants identified in this patient — gene, location, protein change, vaccine inclusion, and VAF trajectories over time."><meta property="og:image" content="https://osteosarc.com/img/sid_s_osteosarcoma_data.png"><!-- Twitter Card --><meta name="twitter:card" content="summary_large_image"><meta name="twitter:title" content="Variants - Sid Sijbrandij's Osteosarcoma Data"><meta name="twitter:description" content="182 somatic variants identified in this patient — gene, location, protein change, vaccine inclusion, and VAF trajectories over time."><meta name="twitter:image" content="https://osteosarc.com/img/sid_s_osteosarcoma_data.png"><link rel="preconnect" href="https://fonts.googleapis.com"><link rel="preconnect" href="https://fonts.gstatic.com" crossorigin><link rel="preconnect" href="https://cdn.jsdelivr.net"><link href="https://fonts.googleapis.com/css2?family=Inter:wght@400;500;600;700&display=swap" rel="stylesheet"><link href="https://cdn.jsdelivr.net/npm/bootstrap@5.3.8/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-sRIl4kxILFvY47J16cr9ZwB07vP4J8+LH7qKQnuqkuIAvNWLzeN8tE5YBujZqJLB" crossorigin="anonymous"><!-- Structured data --><script type="application/ld+json">{"@context":"https://schema.org","@type":"WebSite","name":"Sid Sijbrandij's Osteosarcoma Data","url":"https://osteosarc.com","description":"Open research data portal for osteosarcoma: treatment timeline, bulk and single-cell RNA-seq, copy number variation, tissue imaging, gene set enrichment analysis, and clinical imaging.","about":{"@type":"MedicalCondition","name":"Osteosarcoma","code":{"@type":"MedicalCode","code":"C41.9","codingSystem":"ICD-10"}}}</script><link rel="stylesheet" href="/_astro/BaseLayout.DiZEP4QE.css">
<link rel="stylesheet" href="/_astro/variants@_@astro.CdgpjpXL.css"></head> <body> <div class="navbar navbar-expand-lg navbar-light bg-light py-4"> <div class="container"> <a class="navbar-brand" href="/">Osteosarcoma</a> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarResponsive" aria-controls="navbarResponsive" aria-expanded="false" aria-label="Toggle navigation"> <span class="navbar-toggler-icon"></span> </button> <div class="collapse navbar-collapse sidebar-nav" id="navbarResponsive"> <ul class="navbar-nav ms-auto me-auto"> <li class="nav-item"> <a class="nav-link me-lg-2 me-xl-3 mt-2 mb-1" href="/timeline/" title="Timeline"> <span aria-hidden="true">🩺</span> Timeline </a> </li><li class="nav-item"> <a class="nav-link me-lg-2 me-xl-3 mt-2 mb-1" href="/genomics/" title="Genomics"> <span aria-hidden="true">🧬</span> Genomics </a> </li><li class="nav-item"> <a class="nav-link me-lg-2 me-xl-3 mt-2 mb-1" href="/imaging/" title="Imaging"> <span aria-hidden="true">🩻</span> Imaging </a> </li><li class="nav-item"> <a class="nav-link me-lg-2 me-xl-3 mt-2 mb-1" href="/pathology/" title="Pathology"> <span aria-hidden="true">🔬</span> Pathology </a> </li><li class="nav-item"> <a class="nav-link me-lg-2 me-xl-3 mt-2 mb-1" href="/data/" title="Data"> <span aria-hidden="true">🗂️</span> Data </a> </li><li class="nav-item"> <a class="nav-link me-lg-2 me-xl-3 mt-2 mb-1" href="/blog/" title="Blog"> <span aria-hidden="true">📰</span> Blog </a> </li> </ul> </div> </div> </div> <div class="container">  <div class="py-4"> <h1 class="mb-1">Variants</h1> <p class="lead mb-3">182 somatic variants identified across all sequencing assays. Click any row for full genomic, protein, and VAF detail.</p> <div class="variant-summary"> <div><strong>182</strong> total</div> <div><strong>44</strong> in at least one vaccine</div> <div><strong>13</strong> ELISPOT positive</div> <div><strong>28</strong> in single-cell RNA-seq</div> <div><strong>31</strong> with Xenium probes</div> </div> <p class="variant-download muted small"> <strong>For your own analysis:</strong> download the tidy per-sample
      allele-count table —
<a href="/variants/variant_vafs_long.tsv" download>variant_vafs_long.tsv</a>
(<a href="/variants/variant_vafs_long.columns.tsv" download>column descriptions</a>).
      One row per variant × BAM with raw ref / alt read counts and VAF, across
      the tumor and matched-normal samples; every piled-up variant is included
      and flagged by whether it appears on this page.
</p> <div class="variant-controls"> <input id="variant-filter" type="search" class="form-control form-control-sm" placeholder="Filter by gene, chr, protein change, or consequence…"> <span id="variant-count" class="muted small"></span> </div> <p class="muted small mb-2">
Sparklines show the depth-weighted tumor VAF per date (Σalt ÷ Σdepth across samples on that date, with single-alt-read samples treated as sequencing noise and excluded), sharing one time axis from 2022-12-01 to 2025-04-01 and one Y axis (0 – 66%). Per-date points with combined depth below 20× are dropped from the sparkline but still appear in the hover tooltip. A variant is flagged as <span class="pill pill-low-depth">low depth</span> only when <em>no</em> date reaches 20× — a single well-covered timepoint (including a confident zero) is enough to keep the sparkline. Sort by clicking any header; the Tumor VAF column sorts by depth-weighted mean.
</p> <p class="muted small mb-2">
The <strong>ELISPOT</strong> column reflects only the mutations put through a T-cell response assay: a green <span class="pill pill-elispot">+</span> is a positive response and an amber <span class="pill pill-elispot-neg">no response</span> tag means it was tested but did not respond. A blank cell means the mutation was <em>not tested</em> by ELISPOT — not a negative result.
</p> <p class="muted small mb-2">
The <strong>scRNA-seq</strong> column counts how many single tumor cells carry the mutant allele in the 10x single-cell RNA-seq data (timepoints T1–T3 combined). Sort by it to surface the variants actually observed in single cells; a blank cell means the variant was not detected in any single cell — it may still be present, just not captured. Each variant's page shows the per-timepoint <a href="/scrnaseq/tumor_variants/">UMAP overlay</a>.
</p> <p class="muted small mb-2">
The <strong>Xenium</strong> column marks variants targeted by an allele-specific spatial probe pair (a wild-type and a mutant probe) in the Xenium panel. A muted <span class="xen-probe">probe</span> tag means the pair is present but no mutant signal rose above the noise floor; a percentage is the mutant probe's pseudo-VAF in tumor regions when detected, with <span class="xen-vaf somatic-specific">tumor-specific</span> hits (mutant enriched beyond wild-type) shown in green. Sort by it to surface the variants seen spatially. See the <a href="/xenium/analysis/">Xenium spatial analysis</a>.
</p> <div class="table-responsive"> <table class="table table-sm variants-table"> <thead> <tr> <th data-sort="gene" data-sort-type="text">Gene <span class="sort-arrow"></span></th> <th data-sort="location" data-sort-type="location">Location <span class="sort-arrow"></span></th> <th data-sort="protein" data-sort-type="text">Protein change <span class="sort-arrow"></span></th> <th data-sort="tumor" data-sort-type="num" class="spark-col">Tumor VAF <span class="sort-arrow"></span></th> <th data-sort="sccells" data-sort-type="num" class="num">scRNA-seq <span class="sort-arrow"></span></th> <th data-sort="xenium" data-sort-type="num" class="num">Xenium <span class="sort-arrow"></span></th> <th data-sort="pipelines" data-sort-type="num" class="num">Pipelines <span class="sort-arrow"></span></th> <th data-sort="vaccines" data-sort-type="num" class="num">Vaccines <span class="sort-arrow"></span></th> <th data-sort="elispot" data-sort-type="num">ELISPOT <span class="sort-arrow"></span></th> </tr> </thead> <tbody id="variants-tbody"> <tr data-gene="abca13" data-chr="chr7" data-protein="missense" data-location-key="007:000048410588" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.038755980861244016" data-sccells="0" data-xenium="0"> <td><a href="/variant/ABCA13-chr7-48410588"><strong>ABCA13</strong></a></td> <td class="mono small">chr7:48410588</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ABCA13 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/935</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>45/808</td><td class=&#34;tt-pct&#34;>5.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>36/347</td><td class=&#34;tt-pct&#34;>10.4%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.9% — 81/2090 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.5 105.7,17.2"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.482691171467962" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.173520383967983" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">10.4%</span> <span class="spark-reads">81/2090</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ABCA13 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="abca7" data-chr="chr19" data-protein="p.gly2119arg p.g2119r missense" data-location-key="019:000001065339" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.016057396651861976" data-sccells="1" data-xenium="0"> <td><a href="/variant/ABCA7-chr19-1065339"><strong>ABCA7</strong></a></td> <td class="mono small">chr19:1065339</td> <td class="mono"> p.Gly2119Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ABCA7 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/581</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>47/788</td><td class=&#34;tt-pct&#34;>6.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/997</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/561</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.6% — 47/2927 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.4 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.375033274891916" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.0%</span> <span class="spark-reads">47/2927</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="1 single cells carry this variant">1</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ABCA7 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="abcf2" data-chr="chr7" data-protein data-location-key="007:000151218156" data-vaccines="1" data-pipelines="1" data-elispot="0" data-tumor="0.0007575757575757576" data-sccells="0" data-xenium="0"> <td><a href="/variant/ABCF2-chr7-151218156"><strong>ABCF2</strong></a></td> <td class="mono small">chr7:151218156</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ABCF2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>2/330</td><td class=&#34;tt-pct&#34;>0.6%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1702</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/264</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/344</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.1% — 2/2640 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.8 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.834884103238533" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.6%</span> <span class="spark-reads">2/2640</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ABCF2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="abi3bp" data-chr="chr3" data-protein="p.arg472met p.r472m missense" data-location-key="003:000100850671" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.050530570995452245" data-sccells="0" data-xenium="1"> <td><a href="/variant/ABI3BP-chr3-100850671"><strong>ABI3BP</strong></a></td> <td class="mono small">chr3:100850671</td> <td class="mono"> p.Arg472Met </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ABI3BP — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/651</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>50/912</td><td class=&#34;tt-pct&#34;>5.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>50/414</td><td class=&#34;tt-pct&#34;>12.1%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.1% — 100/1979 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.5 105.7,16.7"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.50635290758542" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="16.709646984825852" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.1%</span> <span class="spark-reads">100/1979</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ABI3BP — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ace" data-chr="chr17" data-protein="p.ser1117thr p.s1117t missense" data-location-key="017:000063497361" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.02962962962962963" data-sccells="0" data-xenium="0"> <td><a href="/variant/ACE-chr17-63497361"><strong>ACE</strong></a></td> <td class="mono small">chr17:63497361</td> <td class="mono"> p.Ser1117Thr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ACE — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/301</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>48/505</td><td class=&#34;tt-pct&#34;>9.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/658</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/156</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.0% — 48/1620 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.4 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.41045959930532" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.5%</span> <span class="spark-reads">48/1620</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ACE — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="acvrl1" data-chr="chr12" data-protein data-location-key="012:000051913344" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.03128313891834571" data-sccells="0" data-xenium="0"> <td><a href="/variant/ACVRL1-chr12-51913344"><strong>ACVRL1</strong></a></td> <td class="mono small">chr12:51913344</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ACVRL1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/372</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>2/806</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>57/627</td><td class=&#34;tt-pct&#34;>9.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/81</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.1% — 59/1886 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.9 105.7,17.5 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.932396717206842" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.523261548578006" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.1%</span> <span class="spark-reads">59/1886</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ACVRL1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="adam17" data-chr="chr2" data-protein="p.glu307ter p.e307* stop gained" data-location-key="002:000009521241" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.028233590733590733" data-sccells="0" data-xenium="0"> <td><a href="/variant/ADAM17-chr2-9521241"><strong>ADAM17</strong></a></td> <td class="mono small">chr2:9521241</td> <td class="mono"> p.Glu307Ter </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ADAM17 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>110/1904</td><td class=&#34;tt-pct&#34;>5.8%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>7/899</td><td class=&#34;tt-pct&#34;>0.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/982</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/359</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.8% — 117/4144 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.4 76.6,19.8 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="18.42602230765724" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.78786556089044" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">5.8%</span> <span class="spark-reads">117/4144</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ADAM17 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="adcy10" data-chr="chr1" data-protein="p.leu25met p.l25m missense" data-location-key="001:000167824546" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.025135869565217392" data-sccells="0" data-xenium="0"> <td><a href="/variant/ADCY10-chr1-167824546"><strong>ADCY10</strong></a></td> <td class="mono small">chr1:167824546</td> <td class="mono"> p.Leu25Met </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ADCY10 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/496</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>10/548</td><td class=&#34;tt-pct&#34;>1.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>27/428</td><td class=&#34;tt-pct&#34;>6.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.5% — 37/1472 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.5 105.7,18.3"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.502844471429892" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.281328691419784" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.3%</span> <span class="spark-reads">37/1472</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ADCY10 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="adgrf5" data-chr="chr6" data-protein="p.asn1279ser p.n1279s missense" data-location-key="006:000046856758" data-vaccines="2" data-pipelines="0" data-elispot="2" data-tumor="0.007215619694397283" data-sccells="0" data-xenium="0"> <td><a href="/variant/ADGRF5-chr6-46856758"><strong>ADGRF5</strong></a></td> <td class="mono small">chr6:46856758</td> <td class="mono"> p.Asn1279Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ADGRF5 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>17/506</td><td class=&#34;tt-pct&#34;>3.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/933</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/865</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/52</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.7% — 17/2356 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.1 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.08468361577883" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">3.4%</span> <span class="spark-reads">17/2356</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ADGRF5 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (0)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-empty&#34;>none</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (10)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">0/10</span>  </span> </span> </td> <td class="num">2</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="agap2" data-chr="chr12" data-protein="p.ser187tyr p.s187y missense" data-location-key="012:000057732961" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.05167785234899329" data-sccells="0" data-xenium="0"> <td><a href="/variant/AGAP2-chr12-57732961"><strong>AGAP2</strong></a></td> <td class="mono small">chr12:57732961</td> <td class="mono"> p.Ser187Tyr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>AGAP2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/194</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>113/1300</td><td class=&#34;tt-pct&#34;>8.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>39/1010</td><td class=&#34;tt-pct&#34;>3.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/474</td><td class=&#34;tt-pct&#34;>0.4%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.2% — 154/2980 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.6 105.7,18.9 118.0,19.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.631857003755737" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.947999212217788" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.88504589465974" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.7%</span> <span class="spark-reads">154/2980</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>AGAP2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="akt2" data-chr="chr19" data-protein="p.his240his p.h240h synonymous" data-location-key="019:000040238080" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.06350082827167311" data-sccells="10" data-xenium="0"> <td><a href="/variant/AKT2-chr19-40238080"><strong>AKT2</strong></a></td> <td class="mono small">chr19:40238080</td> <td class="mono"> p.His240His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>AKT2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>6/2124</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>154/561</td><td class=&#34;tt-pct&#34;>27.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>70/846</td><td class=&#34;tt-pct&#34;>8.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/91</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 6.4% — 230/3622 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.9 76.6,12.5 105.7,17.7 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.92303920066203" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="12.521221146686521" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.745758147050903" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">27.5%</span> <span class="spark-reads">230/3622</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="10 single cells carry this variant">10</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>AKT2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="alb" data-chr="chr4" data-protein="p.leu262val p.l262v missense" data-location-key="004:000073412066" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.00823045267489712" data-sccells="0" data-xenium="0"> <td><a href="/variant/ALB-chr4-73412066"><strong>ALB</strong></a></td> <td class="mono small">chr4:73412066</td> <td class="mono"> p.Leu262Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ALB — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>24/1204</td><td class=&#34;tt-pct&#34;>2.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1267</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/445</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.8% — 24/2916 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.5 76.6,20.0 105.7,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.456927781415775" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">2.0%</span> <span class="spark-reads">24/2916</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ALB — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ankdd1a" data-chr="chr15" data-protein="p.arg30gly p.r30g missense" data-location-key="015:000064915850" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.030217849613492623" data-sccells="0" data-xenium="0"> <td><a href="/variant/ANKDD1A-chr15-64915850"><strong>ANKDD1A</strong></a></td> <td class="mono small">chr15:64915850</td> <td class="mono"> p.Arg30Gly </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ANKDD1A — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/326</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>43/450</td><td class=&#34;tt-pct&#34;>9.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/637</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/10</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.0% — 43/1423 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.4 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.396672694394212" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.6%</span> <span class="spark-reads">43/1423</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ANKDD1A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ankrd17" data-chr="chr4" data-protein="p.gly1719arg p.g1719r missense" data-location-key="004:000073097139" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.036129822412737295" data-sccells="0" data-xenium="3.271"> <td><a href="/variant/ANKRD17-chr4-73097139"><strong>ANKRD17</strong></a></td> <td class="mono small">chr4:73097139</td> <td class="mono"> p.Gly1719Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ANKRD17 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>2/2167</td><td class=&#34;tt-pct&#34;>0.1%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/16</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>91/2853</td><td class=&#34;tt-pct&#34;>3.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>143/1302</td><td class=&#34;tt-pct&#34;>11.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/194</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.6% — 236/6532 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.1 105.7,17.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.974855447193686" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.131014654793756" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.007749935417205" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.0%</span> <span class="spark-reads">236/6532</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 27% in tumor (sample variable)">27%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ANKRD17 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ankrd20a8p" data-chr="chr2" data-protein="splice donor variant&#38;non coding transcript exon" data-location-key="002:000094813391" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.19776536312849163" data-sccells="14" data-xenium="0"> <td><a href="/variant/ANKRD20A8P-chr2-94813391"><strong>ANKRD20A8P</strong></a></td> <td class="mono small">chr2:94813391</td> <td class="mono"> <span class="consequence-tag">splice donor variant&amp;non coding transcript exon</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ANKRD20A8P — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>51/210</td><td class=&#34;tt-pct&#34;>24.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>92/590</td><td class=&#34;tt-pct&#34;>15.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>173/923</td><td class=&#34;tt-pct&#34;>18.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>38/67</td><td class=&#34;tt-pct&#34;>56.7%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 19.8% — 354/1790 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,13.4 76.6,15.8 105.7,14.9 118.0,4.5"></polyline> <circle class="spark-dot tumor" cx="2" cy="13.383570136915527" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.751763876543967" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="14.893571751835257" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="4.548109362770237" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">56.7%</span> <span class="spark-reads">354/1790</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="14 single cells carry this variant">14</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ANKRD20A8P — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="arhgef11" data-chr="chr1" data-protein="p.arg1219trp p.r1219w missense" data-location-key="001:000156940285" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.004578754578754579" data-sccells="0" data-xenium="0"> <td><a href="/variant/ARHGEF11-chr1-156940285"><strong>ARHGEF11</strong></a></td> <td class="mono small">chr1:156940285</td> <td class="mono"> p.Arg1219Trp </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ARHGEF11 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/659</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>10/715</td><td class=&#34;tt-pct&#34;>1.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/791</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/19</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.5% — 10/2184 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.6 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.618963315165846" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.4%</span> <span class="spark-reads">10/2184</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ARHGEF11 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="armc9" data-chr="chr2" data-protein="intronic" data-location-key="002:000231215145" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.31101021566401815" data-sccells="1" data-xenium="0"> <td><a href="/variant/ARMC9-chr2-231215145"><strong>ARMC9</strong></a></td> <td class="mono small">chr2:231215145</td> <td class="mono"> <span class="consequence-tag">intronic</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ARMC9 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>117/178</td><td class=&#34;tt-pct&#34;>65.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>93/284</td><td class=&#34;tt-pct&#34;>32.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>64/416</td><td class=&#34;tt-pct&#34;>15.4%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/3</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 31.1% — 274/881 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,2.1 76.6,11.1 105.7,15.8"></polyline> <circle class="spark-dot tumor" cx="2" cy="2.0923461405611903" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="11.078509028856685" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.808596466824316" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">65.7%</span> <span class="spark-reads">274/881</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="1 single cells carry this variant">1</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ARMC9 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="aspm" data-chr="chr1" data-protein="p.gly2179arg p.g2179r missense" data-location-key="001:000197102716" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.04483586869495596" data-sccells="0" data-xenium="4.161"> <td><a href="/variant/ASPM-chr1-197102716"><strong>ASPM</strong></a></td> <td class="mono small">chr1:197102716</td> <td class="mono"> p.Gly2179Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ASPM — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1172</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>53/1224</td><td class=&#34;tt-pct&#34;>4.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>113/1302</td><td class=&#34;tt-pct&#34;>8.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/49</td><td class=&#34;tt-pct&#34;>4.1%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.5% — 168/3747 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.8 105.7,17.6 118.0,18.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.820311668971385" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.6354947042108" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="18.887994980994208" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.7%</span> <span class="spark-reads">168/3747</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 16% in tumor (somatic specific)">16%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ASPM — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2024</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="atrx" data-chr="chrx" data-protein="p.gly1968arg p.g1968r missense" data-location-key="00X:000077599465" data-vaccines="1" data-pipelines="2" data-elispot="0" data-tumor="0.013543191800878478" data-sccells="0" data-xenium="2.385"> <td><a href="/variant/ATRX-chrX-77599465"><strong>ATRX</strong></a></td> <td class="mono small">chrX:77599465</td> <td class="mono"> p.Gly1968Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ATRX — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/2485</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>74/1217</td><td class=&#34;tt-pct&#34;>6.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1207</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/555</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.4% — 74/5464 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.3 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.34341405139071" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.1%</span> <span class="spark-reads">74/5464</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf not-specific" title="Xenium mutant probe — pseudo-VAF 39% in tumor (not specific)">39%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ATRX — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>BG 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="bag1" data-chr="chr9" data-protein="p.glu63gln p.e63q missense" data-location-key="009:000033262750" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.01948336252189142" data-sccells="2" data-xenium="0"> <td><a href="/variant/BAG1-chr9-33262750"><strong>BAG1</strong></a></td> <td class="mono small">chr9:33262750</td> <td class="mono"> p.Glu63Gln </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BAG1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1430</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>89/1469</td><td class=&#34;tt-pct&#34;>6.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1520</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/149</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.9% — 89/4568 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.3 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.349403033395415" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.1%</span> <span class="spark-reads">89/4568</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="2 single cells carry this variant">2</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BAG1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="baz1b" data-chr="chr7" data-protein="splice acceptor" data-location-key="007:000073498699" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0380465644520159" data-sccells="0" data-xenium="0"> <td><a href="/variant/BAZ1B-chr7-73498699"><strong>BAZ1B</strong></a></td> <td class="mono small">chr7:73498699</td> <td class="mono"> <span class="consequence-tag">splice acceptor</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BAZ1B — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/498</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>67/589</td><td class=&#34;tt-pct&#34;>11.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/658</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/16</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.8% — 67/1761 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.9 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.9009231940611" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.4%</span> <span class="spark-reads">67/1761</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BAZ1B — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="bmp1" data-chr="chr8" data-protein="p.ser366thr p.s366t missense" data-location-key="008:000022192067" data-vaccines="2" data-pipelines="5" data-elispot="0" data-tumor="0.14630577907827358" data-sccells="23" data-xenium="2.3"> <td><a href="/variant/BMP1-chr8-22192067"><strong>BMP1</strong></a></td> <td class="mono small">chr8:22192067</td> <td class="mono"> p.Ser366Thr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BMP1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/561</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>232/1263</td><td class=&#34;tt-pct&#34;>18.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>168/903</td><td class=&#34;tt-pct&#34;>18.6%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/7</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 14.6% — 400/2734 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.0 105.7,14.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.99553719079261" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="14.931325959880567" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">18.6%</span> <span class="spark-reads">400/2734</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="23 single cells carry this variant">23</span> </td> <td class="num xenium-col"> <span class="xen-vaf not-specific" title="Xenium mutant probe — pseudo-VAF 30% in tumor (not specific)">30%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BMP1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num">2</td> <td></td> </tr><tr data-gene="bphl" data-chr="chr6" data-protein="p.ser154phe p.s154f missense" data-location-key="006:000003129127" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0008045052292839903" data-sccells="0" data-xenium="0"> <td><a href="/variant/BPHL-chr6-3129127"><strong>BPHL</strong></a></td> <td class="mono small">chr6:3129127</td> <td class="mono"> p.Ser154Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BPHL — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1584</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>2/1886</td><td class=&#34;tt-pct&#34;>0.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1309</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/193</td><td class=&#34;tt-pct&#34;>1.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.1% — 4/4972 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0 105.7,20.0 118.0,19.7"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.97110909547652" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="118" cy="19.717677482221326" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.0%</span> <span class="spark-reads">4/4972</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BPHL — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="brap" data-chr="chr12" data-protein="p.arg534his p.r534h missense" data-location-key="012:000111644377" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.009028146574614976" data-sccells="0" data-xenium="0"> <td><a href="/variant/BRAP-chr12-111644377"><strong>BRAP</strong></a></td> <td class="mono small">chr12:111644377</td> <td class="mono"> p.Arg534His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BRAP — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>17/841</td><td class=&#34;tt-pct&#34;>2.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/674</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/289</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/79</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.9% — 17/1883 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.4 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.44928645610474" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">2.0%</span> <span class="spark-reads">17/1883</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BRAP — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="brat1" data-chr="chr7" data-protein="p.ala449ser p.a449s missense" data-location-key="007:000002541029" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.027096774193548386" data-sccells="0" data-xenium="0"> <td><a href="/variant/BRAT1-chr7-2541029"><strong>BRAT1</strong></a></td> <td class="mono small">chr7:2541029</td> <td class="mono"> p.Ala449Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BRAT1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/533</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>10/579</td><td class=&#34;tt-pct&#34;>1.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>46/778</td><td class=&#34;tt-pct&#34;>5.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>7/435</td><td class=&#34;tt-pct&#34;>1.6%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.7% — 63/2325 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.5 105.7,18.4 118.0,19.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.529462470368877" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.389164966041736" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.561588825840243" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">5.9%</span> <span class="spark-reads">63/2325</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BRAT1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="btbd11" data-chr="chr12" data-protein="p.gln974ter p.q974* stop gained" data-location-key="012:000107642169" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.21791255289139633" data-sccells="0" data-xenium="0"> <td><a href="/variant/BTBD11-chr12-107642169"><strong>BTBD11</strong></a></td> <td class="mono small">chr12:107642169</td> <td class="mono"> p.Gln974Ter </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BTBD11 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>142/469</td><td class=&#34;tt-pct&#34;>30.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>152/558</td><td class=&#34;tt-pct&#34;>27.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>15/381</td><td class=&#34;tt-pct&#34;>3.9%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/10</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 21.8% — 309/1418 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,11.8 76.6,12.6 105.7,18.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="11.751246351554036" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="12.578661844484628" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.927396733636144" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">30.3%</span> <span class="spark-reads">309/1418</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BTBD11 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="btd" data-chr="chr3" data-protein="p.phe445val p.f445v missense" data-location-key="003:000015645183" data-vaccines="3" data-pipelines="8" data-elispot="2" data-tumor="0.27525183773482165" data-sccells="5" data-xenium="1"> <td><a href="/variant/BTD-chr3-15645183"><strong>BTD</strong></a></td> <td class="mono small">chr3:15645183</td> <td class="mono"> p.Phe445Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BTD — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>335/1334</td><td class=&#34;tt-pct&#34;>25.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>558/1513</td><td class=&#34;tt-pct&#34;>36.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>118/707</td><td class=&#34;tt-pct&#34;>16.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/119</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 27.5% — 1011/3673 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,13.2 76.6,10.0 105.7,15.5 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="13.158334937413754" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="9.952266612803562" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.452890367827793" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">36.9%</span> <span class="spark-reads">1011/3673</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="5 single cells carry this variant">5</span> </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BTD — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">8/10</span>  </span> </span> </td> <td class="num">3</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="btn3a3" data-chr="chr6" data-protein="p.arg305thr p.r305t missense" data-location-key="006:000026448446" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.010144482016600061" data-sccells="0" data-xenium="0"> <td><a href="/variant/BTN3A3-chr6-26448446"><strong>BTN3A3</strong></a></td> <td class="mono small">chr6:26448446</td> <td class="mono"> p.Arg305Thr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>BTN3A3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>33/492</td><td class=&#34;tt-pct&#34;>6.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/894</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1660</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/207</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.0% — 33/3253 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.2 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="18.17265028888987" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.7%</span> <span class="spark-reads">33/3253</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>BTN3A3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cables1" data-chr="chr18" data-protein="p.ala6_ala7dup p.a6_a7dup inframe ins" data-location-key="018:000023135500" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/CABLES1-chr18-23135500"><strong>CABLES1</strong></a></td> <td class="mono small">chr18:23135500</td> <td class="mono"> p.Ala6_Ala7dup </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CABLES1 — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CABLES1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="casp10" data-chr="chr2" data-protein="p.gly275glu p.g275e missense" data-location-key="002:000201209100" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.037723785166240406" data-sccells="0" data-xenium="0"> <td><a href="/variant/CASP10-chr2-201209100"><strong>CASP10</strong></a></td> <td class="mono small">chr2:201209100</td> <td class="mono"> p.Gly275Glu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CASP10 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/319</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>25/462</td><td class=&#34;tt-pct&#34;>5.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>34/700</td><td class=&#34;tt-pct&#34;>4.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/83</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.8% — 59/1564 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.5 105.7,18.7 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.525750921772623" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.676714027383106" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">5.4%</span> <span class="spark-reads">59/1564</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CASP10 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ccdc15" data-chr="chr11" data-protein="p.arg819val p.r819v missense" data-location-key="011:000125038474" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.013962765957446808" data-sccells="0" data-xenium="0"> <td><a href="/variant/CCDC15-chr11-125038474"><strong>CCDC15</strong></a></td> <td class="mono small">chr11:125038474</td> <td class="mono"> p.Arg819Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CCDC15 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/427</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>21/493</td><td class=&#34;tt-pct&#34;>4.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/544</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/40</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.4% — 21/1504 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.8 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.83949983310653" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">4.3%</span> <span class="spark-reads">21/1504</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CCDC15 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Mutect2 2024</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ccdc40" data-chr="chr17" data-protein="p.gln951fs p.q951fs frameshift" data-location-key="017:000080058951" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/CCDC40-chr17-80058951"><strong>CCDC40</strong></a></td> <td class="mono small">chr17:80058951</td> <td class="mono"> p.Gln951fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CCDC40 — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CCDC40 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cd109" data-chr="chr6" data-protein="p.arg1310met p.r1310m missense" data-location-key="006:000073818405" data-vaccines="1" data-pipelines="1" data-elispot="0" data-tumor="0.049000644745325596" data-sccells="0" data-xenium="0"> <td><a href="/variant/CD109-chr6-73818405"><strong>CD109</strong></a></td> <td class="mono small">chr6:73818405</td> <td class="mono"> p.Arg1310Met </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CD109 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/984</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>62/1355</td><td class=&#34;tt-pct&#34;>4.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>88/724</td><td class=&#34;tt-pct&#34;>12.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/39</td><td class=&#34;tt-pct&#34;>5.1%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.9% — 152/3102 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.8 105.7,16.7 118.0,18.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.753405443638524" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="16.68855963953523" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="18.60286548894144" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.2%</span> <span class="spark-reads">152/3102</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CD109 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Mutect2 2024</span> </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="cdc40" data-chr="chr6" data-protein="p.trp475ser p.w475s missense" data-location-key="006:000110228838" data-vaccines="2" data-pipelines="4" data-elispot="0" data-tumor="0.08379219535551831" data-sccells="8" data-xenium="3.157"> <td><a href="/variant/CDC40-chr6-110228838"><strong>CDC40</strong></a></td> <td class="mono small">chr6:110228838</td> <td class="mono"> p.Trp475Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CDC40 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/818</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>241/1357</td><td class=&#34;tt-pct&#34;>17.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>107/1222</td><td class=&#34;tt-pct&#34;>8.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/780</td><td class=&#34;tt-pct&#34;>0.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.4% — 350/4177 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.2 105.7,17.6 118.0,19.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.16150800683883" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.61446713803299" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.930143274447072" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.8%</span> <span class="spark-reads">350/4177</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="8 single cells carry this variant">8</span> </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 16% in tumor (sample variable)">16%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CDC40 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">4/10</span>  </span> </span> </td> <td class="num">2</td> <td></td> </tr><tr data-gene="cdhr18p" data-chr="chr3" data-protein="splice acceptor" data-location-key="003:000063770421" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0703125" data-sccells="0" data-xenium="0"> <td><a href="/variant/CDHR18P-chr3-63770421"><strong>CDHR18P</strong></a></td> <td class="mono small">chr3:63770421</td> <td class="mono"> <span class="consequence-tag">splice acceptor</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CDHR18P — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/131</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/5</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>36/376</td><td class=&#34;tt-pct&#34;>9.6%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 7.0% — 36/512 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.4"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.391520141587474" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.6%</span> <span class="spark-reads">36/512</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CDHR18P — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cdkn2b-as1" data-chr="chr9" data-protein="splice acceptor" data-location-key="009:000022056251" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.06959152798789713" data-sccells="0" data-xenium="0"> <td><a href="/variant/CDKN2B_AS1-chr9-22056251"><strong>CDKN2B-AS1</strong></a></td> <td class="mono small">chr9:22056251</td> <td class="mono"> <span class="consequence-tag">splice acceptor</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CDKN2B-AS1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/149</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>4/183</td><td class=&#34;tt-pct&#34;>2.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>42/328</td><td class=&#34;tt-pct&#34;>12.8%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 7.0% — 46/661 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.4 105.7,16.5"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.404500044466843" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="16.51142327878975" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.8%</span> <span class="spark-reads">46/661</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CDKN2B-AS1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cenpl" data-chr="chr1" data-protein="p.pro26his p.p26h missense" data-location-key="001:000173811223" data-vaccines="1" data-pipelines="3" data-elispot="0" data-tumor="0.0632877447036739" data-sccells="30" data-xenium="0"> <td><a href="/variant/CENPL-chr1-173811223"><strong>CENPL</strong></a></td> <td class="mono small">chr1:173811223</td> <td class="mono"> p.Pro26His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CENPL — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1065</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>158/1327</td><td class=&#34;tt-pct&#34;>11.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>78/955</td><td class=&#34;tt-pct&#34;>8.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/382</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 6.3% — 236/3729 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.8 105.7,17.8 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.756163203789427" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.77482555882715" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.9%</span> <span class="spark-reads">236/3729</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="30 single cells carry this variant">30</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CENPL — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="cgnl1" data-chr="chr15" data-protein="p.leu612fs p.l612fs frameshift" data-location-key="015:000057451531" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.04075235109717868" data-sccells="0" data-xenium="0"> <td><a href="/variant/CGNL1-chr15-57451531"><strong>CGNL1</strong></a></td> <td class="mono small">chr15:57451531</td> <td class="mono"> p.Leu612fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CGNL1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/862</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>70/798</td><td class=&#34;tt-pct&#34;>8.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>21/568</td><td class=&#34;tt-pct&#34;>3.7%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/5</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.1% — 91/2233 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.6 105.7,19.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.61016465213667" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.992734890354786" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.8%</span> <span class="spark-reads">91/2233</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CGNL1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cntrl" data-chr="chr9" data-protein="p.glu464ter p.e464* stop gained" data-location-key="009:000121115135" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.029459901800327332" data-sccells="0" data-xenium="0"> <td><a href="/variant/CNTRL-chr9-121115135"><strong>CNTRL</strong></a></td> <td class="mono small">chr9:121115135</td> <td class="mono"> p.Glu464Ter </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CNTRL — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>3/577</td><td class=&#34;tt-pct&#34;>0.5%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>88/829</td><td class=&#34;tt-pct&#34;>10.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>17/1107</td><td class=&#34;tt-pct&#34;>1.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1153</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.9% — 108/3666 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.9 76.6,17.1 105.7,19.6 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.858349447319018" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.10798212186189" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.58161690115997" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">10.6%</span> <span class="spark-reads">108/3666</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CNTRL — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="col3a1" data-chr data-protein="splice splice splice" data-location-key data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/COL3A1-Splice"><strong>COL3A1</strong></a></td> <td class="mono small"></td> <td class="mono"> Splice </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>COL3A1 — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>COL3A1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="col4a2" data-chr="chr13" data-protein="p.gly372glu p.g372e missense" data-location-key="013:000110449715" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.015200233849751535" data-sccells="0" data-xenium="0"> <td><a href="/variant/COL4A2-chr13-110449715"><strong>COL4A2</strong></a></td> <td class="mono small">chr13:110449715</td> <td class="mono"> p.Gly372Glu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>COL4A2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/589</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>52/1249</td><td class=&#34;tt-pct&#34;>4.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1531</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/52</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.5% — 52/3421 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.9 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.865737074288727" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">4.2%</span> <span class="spark-reads">52/3421</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>COL4A2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cshl1" data-chr="chr17" data-protein="p.ala43asp p.a43d missense" data-location-key="017:000063910807" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.02725173210161663" data-sccells="0" data-xenium="0"> <td><a href="/variant/CSHL1-chr17-63910807"><strong>CSHL1</strong></a></td> <td class="mono small">chr17:63910807</td> <td class="mono"> p.Ala43Asp </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CSHL1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>2/969</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>57/793</td><td class=&#34;tt-pct&#34;>7.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/403</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.7% — 59/2165 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.9 76.6,18.0 105.7,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.943768580050275" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.041721300073654" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.2%</span> <span class="spark-reads">59/2165</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CSHL1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Mutect2 2024</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ctsb" data-chr="chr8" data-protein="3′ utr" data-location-key="008:000011844219" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.04020715630885122" data-sccells="4" data-xenium="0"> <td><a href="/variant/CTSB-chr8-11844219"><strong>CTSB</strong></a></td> <td class="mono small">chr8:11844219</td> <td class="mono"> <span class="consequence-tag">3′ UTR</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CTSB — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>94/837</td><td class=&#34;tt-pct&#34;>11.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>331/4695</td><td class=&#34;tt-pct&#34;>7.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>2/4836</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/252</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.0% — 427/10620 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,16.9 76.6,18.1 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="16.940325497287525" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.079274823934508" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.98873278620114" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.2%</span> <span class="spark-reads">427/10620</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="4 single cells carry this variant">4</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CTSB — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ctse" data-chr="chr1" data-protein="p.cys60phe p.c60f missense" data-location-key="001:000206022947" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.09120788824979457" data-sccells="0" data-xenium="0"> <td><a href="/variant/CTSE-chr1-206022947"><strong>CTSE</strong></a></td> <td class="mono small">chr1:206022947</td> <td class="mono"> p.Cys60Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CTSE — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/69</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>99/732</td><td class=&#34;tt-pct&#34;>13.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>12/416</td><td class=&#34;tt-pct&#34;>2.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 9.1% — 111/1217 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.3 105.7,19.2"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.31534402513859" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.214111837529558" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">13.5%</span> <span class="spark-reads">111/1217</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CTSE — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cttnbp2" data-chr="chr7" data-protein="p.asp480glu p.d480e missense" data-location-key="007:000117791756" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0055181927918606655" data-sccells="0" data-xenium="0"> <td><a href="/variant/CTTNBP2-chr7-117791756"><strong>CTTNBP2</strong></a></td> <td class="mono small">chr7:117791756</td> <td class="mono"> p.Asp480Glu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CTTNBP2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>3/3100</td><td class=&#34;tt-pct&#34;>0.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/2262</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>29/436</td><td class=&#34;tt-pct&#34;>6.7%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.6% — 32/5799 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0 105.7,18.2"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.97363471971067" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.18789090366143" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.7%</span> <span class="spark-reads">32/5799</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CTTNBP2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="cul9" data-chr="chr6" data-protein="p.asp403tyr p.d403y missense" data-location-key="006:000043186384" data-vaccines="2" data-pipelines="0" data-elispot="2" data-tumor="0.011195700850873265" data-sccells="0" data-xenium="1"> <td><a href="/variant/CUL9-chr6-43186384"><strong>CUL9</strong></a></td> <td class="mono small">chr6:43186384</td> <td class="mono"> p.Asp403Tyr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>CUL9 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>22/674</td><td class=&#34;tt-pct&#34;>3.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>3/761</td><td class=&#34;tt-pct&#34;>0.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/780</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/18</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.1% — 25/2233 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.1 76.6,19.9 105.7,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.110725956611095" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.892598726810874" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">3.3%</span> <span class="spark-reads">25/2233</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>CUL9 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (0)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-empty&#34;>none</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (10)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">0/10</span>  </span> </span> </td> <td class="num">2</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="dbh" data-chr="chr9" data-protein="p.his457tyr p.h457y missense" data-location-key="009:000133652279" data-vaccines="0" data-pipelines="5" data-elispot="0" data-tumor="0.25883762732174953" data-sccells="0" data-xenium="0"> <td><a href="/variant/DBH-chr9-133652279"><strong>DBH</strong></a></td> <td class="mono small">chr9:133652279</td> <td class="mono"> p.His457Tyr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DBH — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>193/642</td><td class=&#34;tt-pct&#34;>30.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>173/592</td><td class=&#34;tt-pct&#34;>29.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>66/435</td><td class=&#34;tt-pct&#34;>15.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 25.9% — 432/1669 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,11.8 76.6,12.0 105.7,15.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="11.809788578864648" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="12.038457309026931" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.866408929350875" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">30.1%</span> <span class="spark-reads">432/1669</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DBH — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="dchs2" data-chr="chr4" data-protein="p.ala1340_gln1359delins(20) p.a1340_q1359delins(20) inframe indel" data-location-key="004:000154322488" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/DCHS2-chr4-154322488"><strong>DCHS2</strong></a></td> <td class="mono small">chr4:154322488</td> <td class="mono"> p.Ala1340_Gln1359delins(20) </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DCHS2 — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DCHS2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="dcst2" data-chr="chr1" data-protein="p.val9leu p.v9l missense" data-location-key="001:000155033677" data-vaccines="0" data-pipelines="5" data-elispot="0" data-tumor="0.1232638888888889" data-sccells="1" data-xenium="0"> <td><a href="/variant/DCST2-chr1-155033677"><strong>DCST2</strong></a></td> <td class="mono small">chr1:155033677</td> <td class="mono"> p.Val9Leu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DCST2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>44/237</td><td class=&#34;tt-pct&#34;>18.6%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>74/465</td><td class=&#34;tt-pct&#34;>15.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>24/450</td><td class=&#34;tt-pct&#34;>5.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 12.3% — 142/1152 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,14.9 76.6,15.7 105.7,18.5"></polyline> <circle class="spark-dot tumor" cx="2" cy="14.942019365028498" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.664376130198916" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.546980108499096" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">18.6%</span> <span class="spark-reads">142/1152</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="1 single cells carry this variant">1</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DCST2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="defb131a" data-chr="chr4" data-protein="p.gln67lys p.q67k missense" data-location-key="004:000009450500" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.042709867452135494" data-sccells="0" data-xenium="0"> <td><a href="/variant/DEFB131A-chr4-9450500"><strong>DEFB131A</strong></a></td> <td class="mono small">chr4:9450500</td> <td class="mono"> p.Gln67Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DEFB131A — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/489</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>58/499</td><td class=&#34;tt-pct&#34;>11.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/370</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.3% — 58/1358 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.8 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.833348432851235" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.6%</span> <span class="spark-reads">58/1358</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DEFB131A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="diaph1" data-chr="chr5" data-protein="p.lys1174asn p.k1174n missense" data-location-key="005:000141526090" data-vaccines="1" data-pipelines="2" data-elispot="0" data-tumor="0.02484825493171472" data-sccells="0" data-xenium="0"> <td><a href="/variant/DIAPH1-chr5-141526090"><strong>DIAPH1</strong></a></td> <td class="mono small">chr5:141526090</td> <td class="mono"> p.Lys1174Asn </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DIAPH1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/723</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>125/1123</td><td class=&#34;tt-pct&#34;>11.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>6/2419</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1007</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.5% — 131/5272 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.0 105.7,19.9 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.96748408663825" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.932424663995928" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.1%</span> <span class="spark-reads">131/5272</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DIAPH1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="dot1l" data-chr="chr19" data-protein="p.trp611ter p.w611* stop gained" data-location-key="019:000002214506" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.10747663551401869" data-sccells="0" data-xenium="0"> <td><a href="/variant/DOT1L-chr19-2214506"><strong>DOT1L</strong></a></td> <td class="mono small">chr19:2214506</td> <td class="mono"> p.Trp611Ter </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DOT1L — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/417</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>97/462</td><td class=&#34;tt-pct&#34;>21.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>64/607</td><td class=&#34;tt-pct&#34;>10.5%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/12</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 10.7% — 161/1498 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,14.3 105.7,17.1"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.279913576477773" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.127473031629187" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">21.0%</span> <span class="spark-reads">161/1498</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DOT1L — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="drd1" data-chr="chr5" data-protein="p.ser417pro p.s417p missense" data-location-key="005:000175441851" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.08396560445118867" data-sccells="0" data-xenium="0"> <td><a href="/variant/DRD1-chr5-175441851"><strong>DRD1</strong></a></td> <td class="mono small">chr5:175441851</td> <td class="mono"> p.Ser417Pro </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DRD1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/670</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>148/872</td><td class=&#34;tt-pct&#34;>17.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>18/435</td><td class=&#34;tt-pct&#34;>4.1%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.4% — 166/1977 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.4 105.7,18.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.375997478308477" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.872656980732057" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.0%</span> <span class="spark-reads">166/1977</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DRD1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="dync1h1" data-chr="chr14" data-protein="p.val314ile p.v314i missense" data-location-key="014:000101980529" data-vaccines="5" data-pipelines="8" data-elispot="2" data-tumor="0.22777365032194155" data-sccells="82" data-xenium="4.896"> <td><a href="/variant/DYNC1H1-chr14-101980529"><strong>DYNC1H1</strong></a></td> <td class="mono small">chr14:101980529</td> <td class="mono"> p.Val314Ile </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DYNC1H1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>426/1827</td><td class=&#34;tt-pct&#34;>23.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>2185/6491</td><td class=&#34;tt-pct&#34;>33.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>1046/5151</td><td class=&#34;tt-pct&#34;>20.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>22/2683</td><td class=&#34;tt-pct&#34;>0.8%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 22.8% — 3679/16152 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,13.6 76.6,10.8 105.7,14.5 118.0,19.8"></polyline> <circle class="spark-dot tumor" cx="2" cy="13.647511558093338" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="10.829085090135932" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="14.467607722372067" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.776604284292166" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">33.7%</span> <span class="spark-reads">3679/16152</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="82 single cells carry this variant">82</span> </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 90% in tumor (somatic specific)">90%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DYNC1H1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">8/10</span>  </span> </span> </td> <td class="num">5</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="dync1h1" data-chr="chr14" data-protein="p.gln3267his p.q3267h missense" data-location-key="014:000102030200" data-vaccines="1" data-pipelines="3" data-elispot="0" data-tumor="0.024842190999796374" data-sccells="1" data-xenium="0"> <td><a href="/variant/DYNC1H1-chr14-102030200"><strong>DYNC1H1</strong></a></td> <td class="mono small">chr14:102030200</td> <td class="mono"> p.Gln3267His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>DYNC1H1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1333</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>122/1771</td><td class=&#34;tt-pct&#34;>6.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1570</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/237</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.5% — 122/4911 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.1 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.12321682563054" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.9%</span> <span class="spark-reads">122/4911</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="1 single cells carry this variant">1</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>DYNC1H1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="ednrb" data-chr="chr13" data-protein="p.ile157leu p.i157l missense" data-location-key="013:000077918105" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.08506136267456622" data-sccells="0" data-xenium="0"> <td><a href="/variant/EDNRB-chr13-77918105"><strong>EDNRB</strong></a></td> <td class="mono small">chr13:77918105</td> <td class="mono"> p.Ile157Leu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>EDNRB — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/130</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>183/1443</td><td class=&#34;tt-pct&#34;>12.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>18/637</td><td class=&#34;tt-pct&#34;>2.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/153</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.5% — 201/2363 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.5 105.7,19.2 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.54492411454437" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.230150371457526" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.7%</span> <span class="spark-reads">201/2363</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>EDNRB — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="elmo1" data-chr="chr7" data-protein="p.ile514leu p.i514l missense" data-location-key="007:000036894915" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.01605216955104088" data-sccells="0" data-xenium="0"> <td><a href="/variant/ELMO1-chr7-36894915"><strong>ELMO1</strong></a></td> <td class="mono small">chr7:36894915</td> <td class="mono"> p.Ile514Leu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ELMO1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/530</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>34/1575</td><td class=&#34;tt-pct&#34;>2.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>30/1165</td><td class=&#34;tt-pct&#34;>2.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/717</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.6% — 64/3987 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.4 105.7,19.3 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.41187290105916" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.298434601743125" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">2.6%</span> <span class="spark-reads">64/3987</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ELMO1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="eml5" data-chr="chr14" data-protein="p.arg1023ser p.r1023s missense" data-location-key="014:000088681945" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/EML5-chr14-88681945"><strong>EML5</strong></a></td> <td class="mono small">chr14:88681945</td> <td class="mono"> p.Arg1023Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>EML5 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/886</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/864</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-01-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.0% — 0/1752 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.0%</span> <span class="spark-reads">0/1752</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>EML5 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="epg5" data-chr="chr18" data-protein="p.ala869thr p.a869t missense" data-location-key="018:000045925851" data-vaccines="3" data-pipelines="1" data-elispot="2" data-tumor="0.03133903133903134" data-sccells="0" data-xenium="2.098"> <td><a href="/variant/EPG5-chr18-45925851"><strong>EPG5</strong></a></td> <td class="mono small">chr18:45925851</td> <td class="mono"> p.Ala869Thr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>EPG5 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>72/970</td><td class=&#34;tt-pct&#34;>7.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>5/1033</td><td class=&#34;tt-pct&#34;>0.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/433</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/21</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.1% — 77/2457 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.0 76.6,19.9 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="17.97775582110699" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.868131060185664" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.4%</span> <span class="spark-reads">77/2457</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf not-specific" title="Xenium mutant probe — pseudo-VAF 10% in tumor (not specific)">10%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>EPG5 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num">3</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="exd3" data-chr="chr9" data-protein="p.glu72asp p.e72d missense" data-location-key="009:000137373504" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.03529411764705882" data-sccells="0" data-xenium="0"> <td><a href="/variant/EXD3-chr9-137373504"><strong>EXD3</strong></a></td> <td class="mono small">chr9:137373504</td> <td class="mono"> p.Glu72Asp </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>EXD3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/273</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>2/661</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>61/748</td><td class=&#34;tt-pct&#34;>8.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/103</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.5% — 63/1785 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.9 105.7,17.8 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.9175669501796" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.778219918577328" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.2%</span> <span class="spark-reads">63/1785</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>EXD3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="exoc4" data-chr="chr7" data-protein="p.ser34ile p.s34i missense" data-location-key="007:000133274996" data-vaccines="4" data-pipelines="7" data-elispot="2" data-tumor="0.0851305334846765" data-sccells="298" data-xenium="4.132"> <td><a href="/variant/EXOC4-chr7-133274996"><strong>EXOC4</strong></a></td> <td class="mono small">chr7:133274996</td> <td class="mono"> p.Ser34Ile </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>EXOC4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>126/1698</td><td class=&#34;tt-pct&#34;>7.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>370/2700</td><td class=&#34;tt-pct&#34;>13.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>508/5771</td><td class=&#34;tt-pct&#34;>8.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>46/2165</td><td class=&#34;tt-pct&#34;>2.1%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.5% — 1050/12334 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.0 76.6,16.3 105.7,17.6 118.0,19.4"></polyline> <circle class="spark-dot tumor" cx="2" cy="17.978351299369326" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.266546112115734" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.60179960725245" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.42114103629583" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">13.7%</span> <span class="spark-reads">1050/12334</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="298 single cells carry this variant">298</span> </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 13% in tumor (somatic specific)">13%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>EXOC4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">7/10</span>  </span> </span> </td> <td class="num">4</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="eys" data-chr="chr6" data-protein="p.asp346gly p.d346g missense" data-location-key="006:000065405193" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.03008595988538682" data-sccells="0" data-xenium="0"> <td><a href="/variant/EYS-chr6-65405193"><strong>EYS</strong></a></td> <td class="mono small">chr6:65405193</td> <td class="mono"> p.Asp346Gly </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>EYS — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/741</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>63/995</td><td class=&#34;tt-pct&#34;>6.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/358</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.0% — 63/2094 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.3 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.274995229311113" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.3%</span> <span class="spark-reads">63/2094</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>EYS — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="f8" data-chr="chrx" data-protein="p.ser977arg p.s977r missense" data-location-key="00X:000154930861" data-vaccines="1" data-pipelines="0" data-elispot="0" data-tumor="0.13711453744493393" data-sccells="0" data-xenium="0"> <td><a href="/variant/F8-chrX-154930861"><strong>F8</strong></a></td> <td class="mono small">chrX:154930861</td> <td class="mono"> p.Ser977Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>F8 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/683</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>213/894</td><td class=&#34;tt-pct&#34;>23.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>36/236</td><td class=&#34;tt-pct&#34;>15.3%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/3</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 13.7% — 249/1816 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,13.5 105.7,15.8"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="13.508950568588663" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.844116835749531" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">23.8%</span> <span class="spark-reads">249/1816</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>F8 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (0)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-empty&#34;>none</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (10)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">0/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="fam157a" data-chr data-protein="p.trp70_gln71ins(14) p.w70_q71ins(14) inframe ins" data-location-key data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/FAM157A-p_W70_Q71ins_14"><strong>FAM157A</strong></a></td> <td class="mono small"></td> <td class="mono"> p.Trp70_Gln71ins(14) </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FAM157A — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FAM157A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fam83b" data-chr="chr6" data-protein="p.gly432ser p.g432s missense" data-location-key="006:000054940265" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.014218009478672985" data-sccells="0" data-xenium="0"> <td><a href="/variant/FAM83B-chr6-54940265"><strong>FAM83B</strong></a></td> <td class="mono small">chr6:54940265</td> <td class="mono"> p.Gly432Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FAM83B — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/853</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1033</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>33/435</td><td class=&#34;tt-pct&#34;>7.6%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.4% — 33/2321 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0 105.7,17.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.933204464675438" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.6%</span> <span class="spark-reads">33/2321</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FAM83B — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fam83h" data-chr="chr8" data-protein="p.gly306glu p.g306e missense" data-location-key="008:000143728543" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.07251153592617007" data-sccells="0" data-xenium="0"> <td><a href="/variant/FAM83H-chr8-143728543"><strong>FAM83H</strong></a></td> <td class="mono small">chr8:143728543</td> <td class="mono"> p.Gly306Glu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FAM83H — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/629</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>80/470</td><td class=&#34;tt-pct&#34;>17.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>30/417</td><td class=&#34;tt-pct&#34;>7.2%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 7.3% — 110/1517 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.4 105.7,18.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.362702473933286" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.03999115355094" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.0%</span> <span class="spark-reads">110/1517</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FAM83H — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Mutect2 2024</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fbxo33" data-chr="chr14" data-protein="p.asn147lys p.n147k missense" data-location-key="014:000039431722" data-vaccines="2" data-pipelines="2" data-elispot="0" data-tumor="0.0763653939101015" data-sccells="5" data-xenium="0"> <td><a href="/variant/FBXO33-chr14-39431722"><strong>FBXO33</strong></a></td> <td class="mono small">chr14:39431722</td> <td class="mono"> p.Asn147Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FBXO33 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/387</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>123/866</td><td class=&#34;tt-pct&#34;>14.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>35/581</td><td class=&#34;tt-pct&#34;>6.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/235</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 7.6% — 158/2069 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.1 105.7,18.4 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.13045366654277" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.3587877731541" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">14.2%</span> <span class="spark-reads">158/2069</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="5 single cells carry this variant">5</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FBXO33 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num">2</td> <td></td> </tr><tr data-gene="fcgbp" data-chr="chr19" data-protein="missense" data-location-key="019:000039876804" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.39285714285714285" data-sccells="0" data-xenium="0"> <td><a href="/variant/FCGBP-chr19-39876804"><strong>FCGBP</strong></a></td> <td class="mono small">chr19:39876804</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FCGBP — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/50</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>32/62</td><td class=&#34;tt-pct&#34;>51.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>93/206</td><td class=&#34;tt-pct&#34;>45.1%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>7/18</td><td class=&#34;tt-pct&#34;>38.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 39.3% — 132/336 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,5.9 105.7,7.7"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="5.93851717902351" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="7.700468758229604" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">51.6%</span> <span class="spark-reads">132/336</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FCGBP — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fcgbp" data-chr="chr19" data-protein="missense" data-location-key="019:000039879706" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.3229357798165138" data-sccells="0" data-xenium="0"> <td><a href="/variant/FCGBP-chr19-39879706"><strong>FCGBP</strong></a></td> <td class="mono small">chr19:39879706</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FCGBP — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>18/51</td><td class=&#34;tt-pct&#34;>35.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>52/133</td><td class=&#34;tt-pct&#34;>39.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>104/359</td><td class=&#34;tt-pct&#34;>29.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>2/2</td><td class=&#34;tt-pct&#34;>100.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 32.3% — 176/545 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,10.4 76.6,9.3 105.7,12.1"></polyline> <circle class="spark-dot tumor" cx="2" cy="10.384427188596957" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="9.348162449523448" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="12.107552121373919" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">39.1%</span> <span class="spark-reads">176/545</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FCGBP — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fgfr3" data-chr="chr4" data-protein="p.pro573fs p.p573fs frameshift" data-location-key="004:000001805817" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0034256351698544107" data-sccells="0" data-xenium="0"> <td><a href="/variant/FGFR3-chr4-1805817"><strong>FGFR3</strong></a></td> <td class="mono small">chr4:1805817</td> <td class="mono"> p.Pro573fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FGFR3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/681</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-01-01</td><td class=&#34;tt-reads&#34;>0/1876</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/521</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>12/425</td><td class=&#34;tt-pct&#34;>2.8%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.3% — 12/3503 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 55.9,20.0 76.6,20.0 105.7,19.2"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="55.91549295774648" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.230754175087757" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">2.8%</span> <span class="spark-reads">12/3503</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FGFR3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fhl3" data-chr="chr1" data-protein data-location-key="001:000037998037" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.006003430531732418" data-sccells="0" data-xenium="0"> <td><a href="/variant/FHL3-chr1-37998037"><strong>FHL3</strong></a></td> <td class="mono small">chr1:37998037</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FHL3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>6/558</td><td class=&#34;tt-pct&#34;>1.1%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>2/2</td><td class=&#34;tt-pct&#34;>100.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1193</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>6/521</td><td class=&#34;tt-pct&#34;>1.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/58</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.6% — 14/2332 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.7 76.6,20.0 105.7,19.7 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.707052441229656" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.686248104042512" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.2%</span> <span class="spark-reads">14/2332</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FHL3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fjx1" data-chr="chr11" data-protein="p.trp245cys p.w245c missense" data-location-key="011:000035619371" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.0395010395010395" data-sccells="0" data-xenium="0"> <td><a href="/variant/FJX1-chr11-35619371"><strong>FJX1</strong></a></td> <td class="mono small">chr11:35619371</td> <td class="mono"> p.Trp245Cys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FJX1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/145</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>38/402</td><td class=&#34;tt-pct&#34;>9.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/406</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/9</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.0% — 38/962 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.4 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.42468489379504" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.5%</span> <span class="spark-reads">38/962</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FJX1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="frmpd4" data-chr="chrx" data-protein="missense" data-location-key="00X:000012717076" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.16666666666666666" data-sccells="0" data-xenium="0"> <td><a href="/variant/FRMPD4-chrX-12717076"><strong>FRMPD4</strong></a></td> <td class="mono small">chrX:12717076</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FRMPD4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/167</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>78/311</td><td class=&#34;tt-pct&#34;>25.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>32/182</td><td class=&#34;tt-pct&#34;>17.6%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 16.7% — 110/660 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,13.2 105.7,15.2"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="13.167068838199125" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.209824533513503" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">25.1%</span> <span class="spark-reads">110/660</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FRMPD4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="fzd9" data-chr="chr7" data-protein="p.arg226his p.r226h missense" data-location-key="007:000073434684" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.07486979166666667" data-sccells="0" data-xenium="0"> <td><a href="/variant/FZD9-chr7-73434684"><strong>FZD9</strong></a></td> <td class="mono small">chr7:73434684</td> <td class="mono"> p.Arg226His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>FZD9 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/660</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>97/509</td><td class=&#34;tt-pct&#34;>19.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>18/367</td><td class=&#34;tt-pct&#34;>4.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 7.5% — 115/1536 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,14.8 105.7,18.7"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.808094444661553" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.66377598533636" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">19.1%</span> <span class="spark-reads">115/1536</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>FZD9 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="gabbr1" data-chr="chr6" data-protein="p.gln147ter p.q147* stop gained" data-location-key="006:000029630494" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.043621943159286185" data-sccells="0" data-xenium="0"> <td><a href="/variant/GABBR1-chr6-29630494"><strong>GABBR1</strong></a></td> <td class="mono small">chr6:29630494</td> <td class="mono"> p.Gln147Ter </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GABBR1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>2/1114</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>85/1139</td><td class=&#34;tt-pct&#34;>7.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>45/738</td><td class=&#34;tt-pct&#34;>6.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/35</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.4% — 132/3026 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.0 105.7,18.3 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.951087750510517" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.966856495101347" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.33877298989988" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.5%</span> <span class="spark-reads">132/3026</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GABBR1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="gabbr1" data-chr="chr6" data-protein="p.pro120ser p.p120s missense" data-location-key="006:000029630575" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.05135754007196598" data-sccells="3" data-xenium="0"> <td><a href="/variant/GABBR1-chr6-29630575"><strong>GABBR1</strong></a></td> <td class="mono small">chr6:29630575</td> <td class="mono"> p.Pro120Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GABBR1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1075</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>115/1228</td><td class=&#34;tt-pct&#34;>9.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>42/718</td><td class=&#34;tt-pct&#34;>5.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/36</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.1% — 157/3057 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.4 105.7,18.4 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.448636692956985" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.40633263989281" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.4%</span> <span class="spark-reads">157/3057</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="3 single cells carry this variant">3</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GABBR1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="gapvd1" data-chr="chr9" data-protein="p.ser62fs p.s62fs frameshift" data-location-key="009:000125299105" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/GAPVD1-chr9-125299105"><strong>GAPVD1</strong></a></td> <td class="mono small">chr9:125299105</td> <td class="mono"> p.Ser62fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GAPVD1 — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GAPVD1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="gdf2" data-chr="chr10" data-protein="p.lys329met p.k329m missense" data-location-key="010:000047325480" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.06255666364460562" data-sccells="0" data-xenium="0"> <td><a href="/variant/GDF2-chr10-47325480"><strong>GDF2</strong></a></td> <td class="mono small">chr10:47325480</td> <td class="mono"> p.Lys329Met </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GDF2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/296</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>69/349</td><td class=&#34;tt-pct&#34;>19.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/458</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 6.3% — 69/1103 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,14.6 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.613626118540704" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">19.8%</span> <span class="spark-reads">69/1103</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GDF2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="glb1l3" data-chr="chr11" data-protein="synonymous" data-location-key="011:000134311149" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.4411764705882353" data-sccells="1" data-xenium="0"> <td><a href="/variant/GLB1L3-chr11-134311149"><strong>GLB1L3</strong></a></td> <td class="mono small">chr11:134311149</td> <td class="mono"> <span class="consequence-tag">synonymous</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GLB1L3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>553/837</td><td class=&#34;tt-pct&#34;>66.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>222/562</td><td class=&#34;tt-pct&#34;>39.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>50/466</td><td class=&#34;tt-pct&#34;>10.7%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/5</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 44.1% — 825/1870 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,2.0 76.6,9.2 105.7,17.1"></polyline> <circle class="spark-dot tumor" cx="2" cy="2" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="9.238086657700155" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.07681084059636" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">66.1%</span> <span class="spark-reads">825/1870</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="1 single cells carry this variant">1</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GLB1L3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Mutect2 2024</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="glis3" data-chr="chr9" data-protein="p.ser775fs p.s775fs frameshift" data-location-key="009:000003856149" data-vaccines="1" data-pipelines="2" data-elispot="0" data-tumor="0.08298507462686568" data-sccells="0" data-xenium="0"> <td><a href="/variant/GLIS3-chr9-3856149"><strong>GLIS3</strong></a></td> <td class="mono small">chr9:3856149</td> <td class="mono"> p.Ser775fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GLIS3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/556</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>122/710</td><td class=&#34;tt-pct&#34;>17.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>17/407</td><td class=&#34;tt-pct&#34;>4.2%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.3% — 139/1675 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.3 105.7,18.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.31861549041082" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.86203908988719" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.2%</span> <span class="spark-reads">139/1675</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GLIS3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="golga6l2" data-chr="chr15" data-protein="p.gly759_glu760ins(40) p.g759_e760ins(40) inframe ins" data-location-key="015:000023441121" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/GOLGA6L2-chr15-23441121"><strong>GOLGA6L2</strong></a></td> <td class="mono small">chr15:23441121</td> <td class="mono"> p.Gly759_Glu760ins(40) </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GOLGA6L2 — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GOLGA6L2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="gtf3c5" data-chr="chr9" data-protein="p.glu503_glu506del p.e503_e506del inframe del" data-location-key="009:000133057893" data-vaccines="0" data-pipelines="6" data-elispot="0" data-tumor="0.14441072331815882" data-sccells="0" data-xenium="0"> <td><a href="/variant/GTF3C5-chr9-133057893"><strong>GTF3C5</strong></a></td> <td class="mono small">chr9:133057893</td> <td class="mono"> p.Glu503_Glu506del </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>GTF3C5 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>81/755</td><td class=&#34;tt-pct&#34;>10.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>252/1257</td><td class=&#34;tt-pct&#34;>20.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>232/1321</td><td class=&#34;tt-pct&#34;>17.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>6/621</td><td class=&#34;tt-pct&#34;>1.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 14.4% — 571/3954 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,17.1 76.6,14.5 105.7,15.2 118.0,19.7"></polyline> <circle class="spark-dot tumor" cx="2" cy="17.077120582494043" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.538171052234071" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.215263794073481" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.73677175878607" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">20.0%</span> <span class="spark-reads">571/3954</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>GTF3C5 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">6/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="h1-2" data-chr="chr6" data-protein="p.ala197_lys201del p.a197_k201del inframe del" data-location-key="006:000026055824" data-vaccines="1" data-pipelines="6" data-elispot="0" data-tumor="0.13149335846074348" data-sccells="0" data-xenium="4.189"> <td><a href="/variant/H1_2-chr6-26055824"><strong>H1-2</strong></a></td> <td class="mono small">chr6:26055824</td> <td class="mono"> p.Ala197_Lys201del </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>H1-2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>115/1831</td><td class=&#34;tt-pct&#34;>6.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>876/6283</td><td class=&#34;tt-pct&#34;>13.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>3281/21836</td><td class=&#34;tt-pct&#34;>15.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>54/2949</td><td class=&#34;tt-pct&#34;>1.8%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 13.1% — 4326/32899 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.3 76.6,16.2 105.7,15.9 118.0,19.5"></polyline> <circle class="spark-dot tumor" cx="2" cy="18.28887267009895" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.201519701113742" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.906394602936835" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.501124910089974" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.0%</span> <span class="spark-reads">4326/32899</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 19% in tumor (somatic specific)">19%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>H1-2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">6/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="hic2" data-chr="chr22" data-protein="p.glu486gly p.e486g missense" data-location-key="022:000021446352" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.012064965197215777" data-sccells="0" data-xenium="0"> <td><a href="/variant/HIC2-chr22-21446352"><strong>HIC2</strong></a></td> <td class="mono small">chr22:21446352</td> <td class="mono"> p.Glu486Gly </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>HIC2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/874</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>2/2</td><td class=&#34;tt-pct&#34;>100.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/850</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>24/420</td><td class=&#34;tt-pct&#34;>5.7%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/9</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.2% — 26/2155 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0 105.7,18.4"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.443192973391888" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">5.7%</span> <span class="spark-reads">26/2155</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>HIC2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="hsfx3" data-chr="chrx" data-protein="p.tyr308ter p.y308* stop gained" data-location-key="00X:000149548470" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.14858096828046743" data-sccells="0" data-xenium="0"> <td><a href="/variant/HSFX3-chrX-149548470"><strong>HSFX3</strong></a></td> <td class="mono small">chrX:149548470</td> <td class="mono"> p.Tyr308Ter </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>HSFX3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/128</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>75/248</td><td class=&#34;tt-pct&#34;>30.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>14/219</td><td class=&#34;tt-pct&#34;>6.4%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/4</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 14.9% — 89/599 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,11.8 105.7,18.3"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="11.760849909584088" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.25836656840645" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">30.2%</span> <span class="spark-reads">89/599</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>HSFX3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="hspg2" data-chr="chr1" data-protein data-location-key="001:000021834891" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.001006441223832528" data-sccells="0" data-xenium="0"> <td><a href="/variant/HSPG2-chr1-21834891"><strong>HSPG2</strong></a></td> <td class="mono small">chr1:21834891</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>HSPG2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>5/1745</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/2323</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/857</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/43</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.1% — 5/4968 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.9 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.921936610413635" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.3%</span> <span class="spark-reads">5/4968</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>HSPG2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ift122" data-chr="chr3" data-protein="missense" data-location-key="003:000129502728" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.003582089552238806" data-sccells="0" data-xenium="0"> <td><a href="/variant/IFT122-chr3-129502728"><strong>IFT122</strong></a></td> <td class="mono small">chr3:129502728</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>IFT122 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>6/776</td><td class=&#34;tt-pct&#34;>0.8%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/544</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/326</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/29</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.4% — 6/1675 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.8 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.789349564698643" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.8%</span> <span class="spark-reads">6/1675</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>IFT122 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="itgb1" data-chr="chr10" data-protein data-location-key="010:000032911945" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0021441844951636726" data-sccells="0" data-xenium="0"> <td><a href="/variant/ITGB1-chr10-32911945"><strong>ITGB1</strong></a></td> <td class="mono small">chr10:32911945</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ITGB1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>17/6372</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>18/7846</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>10/5377</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1392</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.2% — 45/20987 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.9 76.6,19.9 105.7,19.9 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.92731480062525" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.93749755118767" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.94933211276615" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.3%</span> <span class="spark-reads">45/20987</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ITGB1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="itpr3" data-chr="chr6" data-protein="p.ala47ser p.a47s missense" data-location-key="006:000033688135" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.046096654275092935" data-sccells="0" data-xenium="0"> <td><a href="/variant/ITPR3-chr6-33688135"><strong>ITPR3</strong></a></td> <td class="mono small">chr6:33688135</td> <td class="mono"> p.Ala47Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ITPR3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1253</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>97/748</td><td class=&#34;tt-pct&#34;>13.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>27/644</td><td class=&#34;tt-pct&#34;>4.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/45</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.6% — 124/2690 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.5 105.7,18.9 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.467005444295093" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.857777453303832" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">13.0%</span> <span class="spark-reads">124/2690</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ITPR3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="jak3" data-chr="chr19" data-protein="intronic" data-location-key="019:000017830035" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.07853403141361257" data-sccells="0" data-xenium="0"> <td><a href="/variant/JAK3-chr19-17830035"><strong>JAK3</strong></a></td> <td class="mono small">chr19:17830035</td> <td class="mono"> <span class="consequence-tag">intronic</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>JAK3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/296</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>74/434</td><td class=&#34;tt-pct&#34;>17.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>16/401</td><td class=&#34;tt-pct&#34;>4.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/15</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 7.9% — 90/1146 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.4 105.7,18.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.354688710927409" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.912952699625258" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.1%</span> <span class="spark-reads">90/1146</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>JAK3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="kdm3b" data-chr="chr5" data-protein="p.pro633ser p.p633s missense" data-location-key="005:000138391529" data-vaccines="3" data-pipelines="3" data-elispot="2" data-tumor="0.042591125198098254" data-sccells="0" data-xenium="3.136"> <td><a href="/variant/KDM3B-chr5-138391529"><strong>KDM3B</strong></a></td> <td class="mono small">chr5:138391529</td> <td class="mono"> p.Pro633Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>KDM3B — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>209/2180</td><td class=&#34;tt-pct&#34;>9.6%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>6/1729</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/967</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/172</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.3% — 215/5048 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,17.4 76.6,19.9 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="17.388063440449923" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.90545706316145" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.6%</span> <span class="spark-reads">215/5048</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 14% in tumor (sample variable)">14%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>KDM3B — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num">3</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="kif1c" data-chr="chr17" data-protein="p.glu456lys p.e456k missense" data-location-key="017:000005007293" data-vaccines="3" data-pipelines="4" data-elispot="2" data-tumor="0.05539772727272727" data-sccells="0" data-xenium="3.193"> <td><a href="/variant/KIF1C-chr17-5007293"><strong>KIF1C</strong></a></td> <td class="mono small">chr17:5007293</td> <td class="mono"> p.Glu456Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>KIF1C — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>125/1114</td><td class=&#34;tt-pct&#34;>11.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>31/817</td><td class=&#34;tt-pct&#34;>3.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/770</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/115</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.5% — 156/2816 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,16.9 76.6,19.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="16.94298440690732" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.966257268133536" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.2%</span> <span class="spark-reads">156/2816</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 19% in tumor (sample variable)">19%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>KIF1C — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">4/10</span>  </span> </span> </td> <td class="num">3</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="klhl33" data-chr="chr14" data-protein="p.glu659val p.e659v missense" data-location-key="014:000020429267" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.05720620842572062" data-sccells="0" data-xenium="0"> <td><a href="/variant/KLHL33-chr14-20429267"><strong>KLHL33</strong></a></td> <td class="mono small">chr14:20429267</td> <td class="mono"> p.Glu659Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>KLHL33 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/801</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>129/981</td><td class=&#34;tt-pct&#34;>13.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/469</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/4</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.7% — 129/2255 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.4 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.41743948769846" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">13.1%</span> <span class="spark-reads">129/2255</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>KLHL33 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="kmt2d" data-chr="chr12" data-protein="missense" data-location-key="012:000049034200" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.004585841215247922" data-sccells="0" data-xenium="0"> <td><a href="/variant/KMT2D-chr12-49034200"><strong>KMT2D</strong></a></td> <td class="mono small">chr12:49034200</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>KMT2D — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>23/3125</td><td class=&#34;tt-pct&#34;>0.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>9/3471</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/369</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/13</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.5% — 32/6978 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.8 76.6,19.9 105.7,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.799483254972877" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.929358367418388" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.7%</span> <span class="spark-reads">32/6978</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>KMT2D — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="krt18" data-chr="chr12" data-protein="p.ala287ser p.a287s missense" data-location-key="012:000052951767" data-vaccines="1" data-pipelines="0" data-elispot="0" data-tumor="0.0158965663416702" data-sccells="0" data-xenium="0"> <td><a href="/variant/KRT18-chr12-52951767"><strong>KRT18</strong></a></td> <td class="mono small">chr12:52951767</td> <td class="mono"> p.Ala287Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>KRT18 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>73/1050</td><td class=&#34;tt-pct&#34;>7.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>2/2188</td><td class=&#34;tt-pct&#34;>0.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1389</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/91</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.6% — 75/4718 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.1 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="18.105884784293465" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.9750967797389" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.0%</span> <span class="spark-reads">75/4718</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>KRT18 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (0)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-empty&#34;>none</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (10)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">0/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="krt37" data-chr="chr17" data-protein="p.arg250lys p.r250k missense" data-location-key="017:000041422418" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.03841870824053452" data-sccells="0" data-xenium="0"> <td><a href="/variant/KRT37-chr17-41422418"><strong>KRT37</strong></a></td> <td class="mono small">chr17:41422418</td> <td class="mono"> p.Arg250Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>KRT37 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1001</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>69/795</td><td class=&#34;tt-pct&#34;>8.7%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.8% — 69/1796 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.63541574260466" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.7%</span> <span class="spark-reads">69/1796</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>KRT37 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="lce1b" data-chr="chr1" data-protein="p.pro14ser p.p14s missense" data-location-key="001:000152812486" data-vaccines="0" data-pipelines="5" data-elispot="0" data-tumor="0.16063764561618638" data-sccells="0" data-xenium="0"> <td><a href="/variant/LCE1B-chr1-152812486"><strong>LCE1B</strong></a></td> <td class="mono small">chr1:152812486</td> <td class="mono"> p.Pro14Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>LCE1B — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>135/595</td><td class=&#34;tt-pct&#34;>22.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>91/587</td><td class=&#34;tt-pct&#34;>15.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>36/449</td><td class=&#34;tt-pct&#34;>8.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 16.1% — 262/1631 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,13.8 76.6,15.8 105.7,17.8"></polyline> <circle class="spark-dot tumor" cx="2" cy="13.818560335526616" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.776464753196905" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.815615976028706" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">22.7%</span> <span class="spark-reads">262/1631</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>LCE1B — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="lepr" data-chr="chr1" data-protein data-location-key="001:000065636606" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.03827072997873848" data-sccells="0" data-xenium="0"> <td><a href="/variant/LEPR-chr1-65636606"><strong>LEPR</strong></a></td> <td class="mono small">chr1:65636606</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>LEPR — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/495</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>24/551</td><td class=&#34;tt-pct&#34;>4.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>30/363</td><td class=&#34;tt-pct&#34;>8.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.8% — 54/1411 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.8 105.7,17.7"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.81332313761269" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.74841958961637" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.3%</span> <span class="spark-reads">54/1411</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>LEPR — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="lingo4" data-chr="chr1" data-protein="p.leu264gly p.l264g missense" data-location-key="001:000151801914" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.02998696219035202" data-sccells="0" data-xenium="0"> <td><a href="/variant/LINGO4-chr1-151801914"><strong>LINGO4</strong></a></td> <td class="mono small">chr1:151801914</td> <td class="mono"> p.Leu264Gly </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>LINGO4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/449</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>22/646</td><td class=&#34;tt-pct&#34;>3.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>24/439</td><td class=&#34;tt-pct&#34;>5.5%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.0% — 46/1534 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.1 105.7,18.5"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.07218157082953" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.510571865204085" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">5.5%</span> <span class="spark-reads">46/1534</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>LINGO4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="lrba" data-chr="chr4" data-protein="missense" data-location-key="004:000151014497" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.004127682993946065" data-sccells="0" data-xenium="0"> <td><a href="/variant/LRBA-chr4-151014497"><strong>LRBA</strong></a></td> <td class="mono small">chr4:151014497</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>LRBA — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>24/2770</td><td class=&#34;tt-pct&#34;>0.9%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1555</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>2/1642</td><td class=&#34;tt-pct&#34;>0.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>4/1301</td><td class=&#34;tt-pct&#34;>0.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.4% — 30/7268 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.8 76.6,20.0 105.7,20.0 118.0,19.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.76394983712079" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.966815928178267" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.916236362903483" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.9%</span> <span class="spark-reads">30/7268</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>LRBA — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ly75" data-chr="chr2" data-protein="p.ser1097cys p.s1097c missense" data-location-key="002:000159840947" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.0546984572230014" data-sccells="0" data-xenium="0"> <td><a href="/variant/LY75-chr2-159840947"><strong>LY75</strong></a></td> <td class="mono small">chr2:159840947</td> <td class="mono"> p.Ser1097Cys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>LY75 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/117</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>30/596</td><td class=&#34;tt-pct&#34;>5.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>48/518</td><td class=&#34;tt-pct&#34;>9.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/195</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.5% — 78/1426 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.6 105.7,17.5 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.62865152857507" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.47544806495982" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.3%</span> <span class="spark-reads">78/1426</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>LY75 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="map2" data-chr="chr2" data-protein="p.leu867fs p.l867fs frameshift" data-location-key="002:000209694768" data-vaccines="3" data-pipelines="2" data-elispot="2" data-tumor="0.25125069483046136" data-sccells="0" data-xenium="0"> <td><a href="/variant/MAP2-chr2-209694768"><strong>MAP2</strong></a></td> <td class="mono small">chr2:209694768</td> <td class="mono"> p.Leu867fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MAP2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>165/619</td><td class=&#34;tt-pct&#34;>26.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>226/769</td><td class=&#34;tt-pct&#34;>29.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>61/410</td><td class=&#34;tt-pct&#34;>14.9%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 25.1% — 452/1799 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,12.7 76.6,12.0 105.7,15.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="12.737834750677024" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="11.993274655090921" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.94660609535571" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">29.4%</span> <span class="spark-reads">452/1799</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MAP2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num">3</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="map2" data-chr="chr2" data-protein="p.gly868fs p.g868fs frameshift" data-location-key="002:000209694772" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.2894736842105263" data-sccells="0" data-xenium="1"> <td><a href="/variant/MAP2-chr2-209694772"><strong>MAP2</strong></a></td> <td class="mono small">chr2:209694772</td> <td class="mono"> p.Gly868fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MAP2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>165/526</td><td class=&#34;tt-pct&#34;>31.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>225/637</td><td class=&#34;tt-pct&#34;>35.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>61/394</td><td class=&#34;tt-pct&#34;>15.5%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 28.9% — 451/1558 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,11.5 76.6,10.4 105.7,15.8"></polyline> <circle class="spark-dot tumor" cx="2" cy="11.453839754123722" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="10.376879643219091" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.782001266740714" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">35.3%</span> <span class="spark-reads">451/1558</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MAP2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="marcol" data-chr="chr5" data-protein="p.ser171thr p.s171t missense" data-location-key="005:000148242907" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.052525252525252523" data-sccells="0" data-xenium="0"> <td><a href="/variant/MARCOL-chr5-148242907"><strong>MARCOL</strong></a></td> <td class="mono small">chr5:148242907</td> <td class="mono"> p.Ser171Thr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MARCOL — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/165</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>10/295</td><td class=&#34;tt-pct&#34;>3.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>42/530</td><td class=&#34;tt-pct&#34;>7.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.3% — 52/990 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.1 105.7,17.8"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.076470407944342" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.841031764986866" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.9%</span> <span class="spark-reads">52/990</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MARCOL — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="mbd4" data-chr="chr3" data-protein="p.arg45lys p.r45k missense" data-location-key="003:000129437921" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0073061071562382915" data-sccells="0" data-xenium="0"> <td><a href="/variant/MBD4-chr3-129437921"><strong>MBD4</strong></a></td> <td class="mono small">chr3:129437921</td> <td class="mono"> p.Arg45Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MBD4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>30/946</td><td class=&#34;tt-pct&#34;>3.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>3/2371</td><td class=&#34;tt-pct&#34;>0.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>4/1311</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/710</td><td class=&#34;tt-pct&#34;>0.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.7% — 39/5338 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.1 76.6,20.0 105.7,19.9 118.0,19.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.136021470434187" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.96552831341336" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.916875292248232" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.92325599164608" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">3.2%</span> <span class="spark-reads">39/5338</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MBD4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="msl2" data-chr="chr3" data-protein data-location-key="003:000136151340" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.005121353818748608" data-sccells="0" data-xenium="0"> <td><a href="/variant/MSL2-chr3-136151340"><strong>MSL2</strong></a></td> <td class="mono small">chr3:136151340</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MSL2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>16/1488</td><td class=&#34;tt-pct&#34;>1.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>7/1872</td><td class=&#34;tt-pct&#34;>0.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/897</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/234</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.5% — 23/4491 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.7 76.6,19.9 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.707052441229656" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.898125608568648" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.1%</span> <span class="spark-reads">23/4491</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MSL2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="mt-nd5" data-chr="chrm" data-protein="p.ala220thr p.a220t missense" data-location-key="00M:000000012994" data-vaccines="1" data-pipelines="1" data-elispot="0" data-tumor="0.3723384558415108" data-sccells="0" data-xenium="0"> <td><a href="/variant/MT_ND5-chrM-12994"><strong>MT-ND5</strong></a></td> <td class="mono small">chrM:12994</td> <td class="mono"> p.Ala220Thr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MT-ND5 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>7164/19290</td><td class=&#34;tt-pct&#34;>37.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>19232/38014</td><td class=&#34;tt-pct&#34;>50.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>12910/48653</td><td class=&#34;tt-pct&#34;>26.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>914/2063</td><td class=&#34;tt-pct&#34;>44.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 37.2% — 40220/108020 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,9.9 76.6,6.2 105.7,12.8 118.0,7.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="9.881964907938885" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="6.2166840407422" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="12.770813156713098" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="7.929651773826105" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">50.6%</span> <span class="spark-reads">40220/108020</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MT-ND5 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="muc2" data-chr="chr11" data-protein="p.pro1931ser p.p1931s missense" data-location-key="011:000001095629" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.04738760631834751" data-sccells="0" data-xenium="0"> <td><a href="/variant/MUC2-chr11-1095629"><strong>MUC2</strong></a></td> <td class="mono small">chr11:1095629</td> <td class="mono"> p.Pro1931Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MUC2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/142</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>39/395</td><td class=&#34;tt-pct&#34;>9.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/286</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.7% — 39/823 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.3 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.310073935037884" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.9%</span> <span class="spark-reads">39/823</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MUC2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="muc3a" data-chr="chr7" data-protein="p.pro451_ala484dup p.p451_a484dup inframe ins" data-location-key="007:000100953130" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/MUC3A-chr7-100953130"><strong>MUC3A</strong></a></td> <td class="mono small">chr7:100953130</td> <td class="mono"> p.Pro451_Ala484dup </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MUC3A — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MUC3A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="myo15b" data-chr="chr17" data-protein="fs fs frameshift" data-location-key="017:000075589953" data-vaccines="2" data-pipelines="0" data-elispot="2" data-tumor="0.013333333333333334" data-sccells="0" data-xenium="0"> <td><a href="/variant/MYO15B-chr17-75589953"><strong>MYO15B</strong></a></td> <td class="mono small">chr17:75589953</td> <td class="mono"> fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MYO15B — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>15/350</td><td class=&#34;tt-pct&#34;>4.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>4/438</td><td class=&#34;tt-pct&#34;>0.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/630</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/7</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.3% — 19/1425 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.8 76.6,19.8 105.7,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="18.832394730043916" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.751195224058065" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">4.3%</span> <span class="spark-reads">19/1425</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MYO15B — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (0)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-empty&#34;>none</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (10)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">0/10</span>  </span> </span> </td> <td class="num">2</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="myo9a" data-chr="chr15" data-protein="p.asp523val p.d523v missense" data-location-key="015:000071994488" data-vaccines="2" data-pipelines="0" data-elispot="2" data-tumor="0.008860759493670886" data-sccells="0" data-xenium="0"> <td><a href="/variant/MYO9A-chr15-71994488"><strong>MYO9A</strong></a></td> <td class="mono small">chr15:71994488</td> <td class="mono"> p.Asp523Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>MYO9A — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>19/707</td><td class=&#34;tt-pct&#34;>2.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>2/911</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/611</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/141</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.9% — 21/2370 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.3 76.6,19.9 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.267838279565492" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.940188533555123" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">2.7%</span> <span class="spark-reads">21/2370</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>MYO9A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (0)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-empty&#34;>none</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (10)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">0/10</span>  </span> </span> </td> <td class="num">2</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="nav2" data-chr="chr11" data-protein="p.ala1809val p.a1809v missense" data-location-key="011:000020080142" data-vaccines="1" data-pipelines="5" data-elispot="0" data-tumor="0.12602739726027398" data-sccells="1" data-xenium="0"> <td><a href="/variant/NAV2-chr11-20080142"><strong>NAV2</strong></a></td> <td class="mono small">chr11:20080142</td> <td class="mono"> p.Ala1809Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NAV2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/315</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>94/546</td><td class=&#34;tt-pct&#34;>17.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>90/592</td><td class=&#34;tt-pct&#34;>15.2%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/7</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 12.6% — 184/1460 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.3 105.7,15.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.309619855731972" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.858156981574703" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.2%</span> <span class="spark-reads">184/1460</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="1 single cells carry this variant">1</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NAV2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="nbpf1" data-chr="chr1" data-protein="missense" data-location-key="001:000016563989" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.2345679012345679" data-sccells="0" data-xenium="0"> <td><a href="/variant/NBPF1-chr1-16563989"><strong>NBPF1</strong></a></td> <td class="mono small">chr1:16563989</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NBPF1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>11/42</td><td class=&#34;tt-pct&#34;>26.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>8/34</td><td class=&#34;tt-pct&#34;>23.5%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-01-01</td><td class=&#34;tt-reads&#34;>0/5</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 23.5% — 19/81 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,12.9 76.6,13.6"></polyline> <circle class="spark-dot tumor" cx="2" cy="12.864634461379488" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="13.589618125731306" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">26.2%</span> <span class="spark-reads">19/81</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NBPF1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="nbpf1" data-chr="chr1" data-protein="missense" data-location-key="001:000016564149" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.213768115942029" data-sccells="0" data-xenium="0"> <td><a href="/variant/NBPF1-chr1-16564149"><strong>NBPF1</strong></a></td> <td class="mono small">chr1:16564149</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NBPF1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>46/298</td><td class=&#34;tt-pct&#34;>15.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>62/188</td><td class=&#34;tt-pct&#34;>33.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>10/66</td><td class=&#34;tt-pct&#34;>15.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 21.4% — 118/552 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,15.8 76.6,11.0 105.7,15.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="15.794531354296879" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="11.015236043245741" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.87210258096334" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">33.0%</span> <span class="spark-reads">118/552</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NBPF1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ndst4" data-chr="chr4" data-protein="p.gly529trp p.g529w missense" data-location-key="004:000114870902" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.08427762039660057" data-sccells="0" data-xenium="0"> <td><a href="/variant/NDST4-chr4-114870902"><strong>NDST4</strong></a></td> <td class="mono small">chr4:114870902</td> <td class="mono"> p.Gly529Trp </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NDST4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/234</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>98/768</td><td class=&#34;tt-pct&#34;>12.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>21/410</td><td class=&#34;tt-pct&#34;>5.1%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.4% — 119/1412 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.5 105.7,18.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.523536392405063" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.6045693115159" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.8%</span> <span class="spark-reads">119/1412</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NDST4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ndufa11" data-chr="chr19" data-protein="missense" data-location-key="019:000005896456" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0025810892196506926" data-sccells="0" data-xenium="0"> <td><a href="/variant/NDUFA11-chr19-5896456"><strong>NDUFA11</strong></a></td> <td class="mono small">chr19:5896456</td> <td class="mono"> <span class="consequence-tag">missense</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NDUFA11 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>29/1406</td><td class=&#34;tt-pct&#34;>2.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>44/16575</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>60/29776</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>17/10358</td><td class=&#34;tt-pct&#34;>0.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.3% — 150/58115 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.4 76.6,19.9 105.7,19.9 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.43806574252943" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.92767774295697" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.945101847866116" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.955285760724472" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">2.1%</span> <span class="spark-reads">150/58115</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NDUFA11 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="necap1" data-chr="chr12" data-protein="p.gly171= p.g171= synonymous" data-location-key="012:000008092892" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.019849418206707735" data-sccells="0" data-xenium="0"> <td><a href="/variant/NECAP1-chr12-8092892"><strong>NECAP1</strong></a></td> <td class="mono small">chr12:8092892</td> <td class="mono"> p.Gly171= </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NECAP1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1288</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/6</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>26/1593</td><td class=&#34;tt-pct&#34;>1.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>61/1065</td><td class=&#34;tt-pct&#34;>5.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/431</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.0% — 87/4383 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.6 105.7,18.4 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.555337603825052" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.439538496803607" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">5.7%</span> <span class="spark-reads">87/4383</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NECAP1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="nlrp4" data-chr="chr19" data-protein="p.his639asp p.h639d missense" data-location-key="019:000055861444" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.04452226113056528" data-sccells="0" data-xenium="0"> <td><a href="/variant/NLRP4-chr19-55861444"><strong>NLRP4</strong></a></td> <td class="mono small">chr19:55861444</td> <td class="mono"> p.His639Asp </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NLRP4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/736</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>89/822</td><td class=&#34;tt-pct&#34;>10.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/441</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.5% — 89/1999 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.1 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.050210530484023" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">10.8%</span> <span class="spark-reads">89/1999</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NLRP4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="nme1" data-chr="chr17" data-protein="p.gly24arg p.g24r intronic" data-location-key="017:000051154443" data-vaccines="1" data-pipelines="6" data-elispot="0" data-tumor="0.4667271627344223" data-sccells="377" data-xenium="3.8040000000000003"> <td><a href="/variant/NME1-chr17-51154443"><strong>NME1</strong></a></td> <td class="mono small">chr17:51154443</td> <td class="mono"> p.Gly24Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NME1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>120/573</td><td class=&#34;tt-pct&#34;>20.9%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>667/1248</td><td class=&#34;tt-pct&#34;>53.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>707/1327</td><td class=&#34;tt-pct&#34;>53.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>49/158</td><td class=&#34;tt-pct&#34;>31.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 46.7% — 1543/3306 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,14.3 76.6,5.4 105.7,5.5 118.0,11.6"></polyline> <circle class="spark-dot tumor" cx="2" cy="14.294424509813204" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="5.4392387675615534" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="5.484856867589405" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="11.550873257490787" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">53.4%</span> <span class="spark-reads">1543/3306</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="377 single cells carry this variant">377</span> </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 80% in tumor (sample variable)">80%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NME1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">6/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="nnt" data-chr="chr5" data-protein data-location-key="005:000043612993" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.000524177696239025" data-sccells="0" data-xenium="0"> <td><a href="/variant/NNT-chr5-43612993"><strong>NNT</strong></a></td> <td class="mono small">chr5:43612993</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NNT — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>4/2182</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/3093</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1649</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/707</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.1% — 4/7631 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.95005660317939" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.2%</span> <span class="spark-reads">4/7631</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NNT — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="nr2f2" data-chr="chr15" data-protein="p.gly65val p.g65v missense" data-location-key="015:000096332299" data-vaccines="3" data-pipelines="4" data-elispot="1" data-tumor="0.12115732368896925" data-sccells="0" data-xenium="0"> <td><a href="/variant/NR2F2-chr15-96332299"><strong>NR2F2</strong></a></td> <td class="mono small">chr15:96332299</td> <td class="mono"> p.Gly65Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NR2F2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>120/694</td><td class=&#34;tt-pct&#34;>17.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>136/1020</td><td class=&#34;tt-pct&#34;>13.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>12/451</td><td class=&#34;tt-pct&#34;>2.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/47</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 12.1% — 268/2212 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,15.3 76.6,16.4 105.7,19.3 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="15.289200639946635" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.36745027124774" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.27510094104722" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.3%</span> <span class="spark-reads">268/2212</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NR2F2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">4/10</span>  </span> </span> </td> <td class="num">3</td> <td><span class="pill pill-elispot-neg" title="Tested by ELISPOT — no response">no response</span></td> </tr><tr data-gene="ntf3" data-chr="chr12" data-protein="p.lys69ser p.k69s missense" data-location-key="012:000005494381" data-vaccines="1" data-pipelines="1" data-elispot="0" data-tumor="0.04054054054054054" data-sccells="0" data-xenium="0"> <td><a href="/variant/NTF3-chr12-5494381"><strong>NTF3</strong></a></td> <td class="mono small">chr12:5494381</td> <td class="mono"> p.Lys69Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>NTF3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/746</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>72/862</td><td class=&#34;tt-pct&#34;>8.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/168</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.1% — 72/1776 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.7 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.724388801013667" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.4%</span> <span class="spark-reads">72/1776</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>NTF3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Mutect2 2024</span> </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="odf1" data-chr="chr8" data-protein="p.val150leu p.v150l missense" data-location-key="008:000102560579" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.012711864406779662" data-sccells="0" data-xenium="0"> <td><a href="/variant/ODF1-chr8-102560579"><strong>ODF1</strong></a></td> <td class="mono small">chr8:102560579</td> <td class="mono"> p.Val150Leu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ODF1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>16/822</td><td class=&#34;tt-pct&#34;>1.9%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>5/826</td><td class=&#34;tt-pct&#34;>0.6%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-01-01</td><td class=&#34;tt-reads&#34;>0/3</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.3% — 21/1652 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.5 76.6,19.8"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.469700769525218" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.835084001418632" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.9%</span> <span class="spark-reads">21/1652</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ODF1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="or10h1" data-chr="chr19" data-protein="p.ser112tyr p.s112y missense" data-location-key="019:000015807703" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.15165031222123104" data-sccells="0" data-xenium="0"> <td><a href="/variant/OR10H1-chr19-15807703"><strong>OR10H1</strong></a></td> <td class="mono small">chr19:15807703</td> <td class="mono"> p.Ser112Tyr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>OR10H1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/23</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>134/644</td><td class=&#34;tt-pct&#34;>20.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>36/454</td><td class=&#34;tt-pct&#34;>7.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 15.2% — 170/1121 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,14.3 105.7,17.8"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.33119180528568" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.839673068803723" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">20.8%</span> <span class="spark-reads">170/1121</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>OR10H1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="or10p1" data-chr="chr12" data-protein="p.thr204asn p.t204n missense" data-location-key="012:000055637502" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.05011135857461024" data-sccells="0" data-xenium="0"> <td><a href="/variant/OR10P1-chr12-55637502"><strong>OR10P1</strong></a></td> <td class="mono small">chr12:55637502</td> <td class="mono"> p.Thr204Asn </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>OR10P1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/172</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>41/1079</td><td class=&#34;tt-pct&#34;>3.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>49/542</td><td class=&#34;tt-pct&#34;>9.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/3</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.0% — 90/1796 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.0 105.7,17.5"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.964773826143354" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.53697043299547" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.0%</span> <span class="spark-reads">90/1796</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>OR10P1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="or2t12" data-chr="chr1" data-protein="p.tyr276his p.y276h missense" data-location-key="001:000248294753" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.03555045871559633" data-sccells="0" data-xenium="0"> <td><a href="/variant/OR2T12-chr1-248294753"><strong>OR2T12</strong></a></td> <td class="mono small">chr1:248294753</td> <td class="mono"> p.Tyr276His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>OR2T12 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/640</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>62/623</td><td class=&#34;tt-pct&#34;>10.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/481</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.6% — 62/1744 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.3 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.28870686377239" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">10.0%</span> <span class="spark-reads">62/1744</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>OR2T12 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="otud4" data-chr data-protein="p.ala153del p.a153del inframe del" data-location-key data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/OTUD4-p_A153del"><strong>OTUD4</strong></a></td> <td class="mono small"></td> <td class="mono"> p.Ala153del </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>OTUD4 — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>OTUD4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="pcdh15" data-chr="chr10" data-protein="p.arg683met p.r683m missense" data-location-key="010:000054079389" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.0972836386607707" data-sccells="0" data-xenium="0"> <td><a href="/variant/PCDH15-chr10-54079389"><strong>PCDH15</strong></a></td> <td class="mono small">chr10:54079389</td> <td class="mono"> p.Arg683Met </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PCDH15 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/705</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>121/459</td><td class=&#34;tt-pct&#34;>26.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>33/419</td><td class=&#34;tt-pct&#34;>7.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 9.7% — 154/1583 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,12.8 105.7,17.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="12.817998085310073" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.854281484806243" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">26.4%</span> <span class="spark-reads">154/1583</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PCDH15 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="pcdh19" data-chr="chrx" data-protein="p.? p.? splice donor variant&#38;intron" data-location-key="00X:000100341898" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0930576070901034" data-sccells="0" data-xenium="0"> <td><a href="/variant/PCDH19-chrX-100341898"><strong>PCDH19</strong></a></td> <td class="mono small">chrX:100341898</td> <td class="mono"> p.? </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PCDH19 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/163</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>17/256</td><td class=&#34;tt-pct&#34;>6.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>46/257</td><td class=&#34;tt-pct&#34;>17.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 9.3% — 63/677 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.2 105.7,15.1"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.19081995931284" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.123620013931792" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.9%</span> <span class="spark-reads">63/677</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PCDH19 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="pdzrn4" data-chr="chr12" data-protein="p.glu677val p.e677v missense" data-location-key="012:000041572809" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.005036373810856184" data-sccells="0" data-xenium="0"> <td><a href="/variant/PDZRN4-chr12-41572809"><strong>PDZRN4</strong></a></td> <td class="mono small">chr12:41572809</td> <td class="mono"> p.Glu677Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PDZRN4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>2/1024</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>7/7</td><td class=&#34;tt-pct&#34;>100.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/304</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/452</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.5% — 9/1787 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.9 76.6,20.0 105.7,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.94678882233273" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.2%</span> <span class="spark-reads">9/1787</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PDZRN4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="pex7" data-chr="chr6" data-protein data-location-key="006:000136826422" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.00437375745526839" data-sccells="0" data-xenium="0"> <td><a href="/variant/PEX7-chr6-136826422"><strong>PEX7</strong></a></td> <td class="mono small">chr6:136826422</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PEX7 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>11/995</td><td class=&#34;tt-pct&#34;>1.1%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/381</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/885</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/254</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.4% — 11/2515 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.7 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.6988086908321" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.1%</span> <span class="spark-reads">11/2515</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PEX7 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">LENS 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="pip5k1a" data-chr="chr1" data-protein="p.gly474fs p.g474fs frameshift" data-location-key="001:000151242178" data-vaccines="3" data-pipelines="3" data-elispot="0" data-tumor="0.05578775213519898" data-sccells="0" data-xenium="1"> <td><a href="/variant/PIP5K1A-chr1-151242178"><strong>PIP5K1A</strong></a></td> <td class="mono small">chr1:151242178</td> <td class="mono"> p.Gly474fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PIP5K1A — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/2860</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>229/1452</td><td class=&#34;tt-pct&#34;>15.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>75/958</td><td class=&#34;tt-pct&#34;>7.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>3/233</td><td class=&#34;tt-pct&#34;>1.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.6% — 307/5503 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.7 105.7,17.9 118.0,19.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.703234050184568" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.867109371165817" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.649217300871562" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.8%</span> <span class="spark-reads">307/5503</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PIP5K1A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num">3</td> <td></td> </tr><tr data-gene="pla2g7" data-chr="chr6" data-protein="p.leu314phe p.l314f missense" data-location-key="006:000046708091" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.01256106071179344" data-sccells="0" data-xenium="0"> <td><a href="/variant/PLA2G7-chr6-46708091"><strong>PLA2G7</strong></a></td> <td class="mono small">chr6:46708091</td> <td class="mono"> p.Leu314Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PLA2G7 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/656</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>6/762</td><td class=&#34;tt-pct&#34;>0.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>44/2267</td><td class=&#34;tt-pct&#34;>1.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>4/614</td><td class=&#34;tt-pct&#34;>0.7%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.3% — 54/4299 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.8 105.7,19.5 118.0,19.8"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.78547934672723" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.471221256952692" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.822513856901356" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.9%</span> <span class="spark-reads">54/4299</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PLA2G7 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="plk4" data-chr="chr4" data-protein="p.asn449= p.n449= synonymous" data-location-key="004:000127886717" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.10672953279039862" data-sccells="4" data-xenium="0"> <td><a href="/variant/PLK4-chr4-127886717"><strong>PLK4</strong></a></td> <td class="mono small">chr4:127886717</td> <td class="mono"> p.Asn449= </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PLK4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>82/694</td><td class=&#34;tt-pct&#34;>11.8%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>110/872</td><td class=&#34;tt-pct&#34;>12.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>57/628</td><td class=&#34;tt-pct&#34;>9.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/139</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 10.7% — 249/2333 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,16.8 76.6,16.6 105.7,17.5 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="16.7809537706302" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.563241369013056" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.5272053996153" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.6%</span> <span class="spark-reads">249/2333</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="4 single cells carry this variant">4</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PLK4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">DRAGEN</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ppp1r3f" data-chr="chrx" data-protein="p.gly298arg p.g298r missense" data-location-key="00X:000049270761" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.05197505197505198" data-sccells="0" data-xenium="3.425"> <td><a href="/variant/PPP1R3F-chrX-49270761"><strong>PPP1R3F</strong></a></td> <td class="mono small">chrX:49270761</td> <td class="mono"> p.Gly298Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PPP1R3F — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/684</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>20/459</td><td class=&#34;tt-pct&#34;>4.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>48/283</td><td class=&#34;tt-pct&#34;>17.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>7/17</td><td class=&#34;tt-pct&#34;>41.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.2% — 75/1443 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.8 105.7,15.4"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.812892245505797" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.379088684272743" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.0%</span> <span class="spark-reads">75/1443</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 43% in tumor (sample variable)">43%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PPP1R3F — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ppp6r3" data-chr="chr11" data-protein="p.605ser p.605s" data-location-key="011:000068601969" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.00831899024670109" data-sccells="0" data-xenium="0"> <td><a href="/variant/PPP6R3-chr11-68601969"><strong>PPP6R3</strong></a></td> <td class="mono small">chr11:68601969</td> <td class="mono"> p.605Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PPP6R3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1343</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>29/414</td><td class=&#34;tt-pct&#34;>7.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1473</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/256</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.8% — 29/3486 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.1 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.091595251198992" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.0%</span> <span class="spark-reads">29/3486</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PPP6R3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="prickle2" data-chr="chr3" data-protein="p.arg22lys p.r22k missense" data-location-key="003:000064198863" data-vaccines="1" data-pipelines="3" data-elispot="0" data-tumor="0.05757009345794393" data-sccells="0" data-xenium="0"> <td><a href="/variant/PRICKLE2-chr3-64198863"><strong>PRICKLE2</strong></a></td> <td class="mono small">chr3:64198863</td> <td class="mono"> p.Arg22Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PRICKLE2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/962</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>154/1203</td><td class=&#34;tt-pct&#34;>12.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/507</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/3</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 5.8% — 154/2675 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.5 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.512389911297706" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.8%</span> <span class="spark-reads">154/2675</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PRICKLE2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="prpsap2" data-chr="chr17" data-protein="p.ser357tyr p.s357y missense" data-location-key="017:000018930658" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/PRPSAP2-chr17-18930658"><strong>PRPSAP2</strong></a></td> <td class="mono small">chr17:18930658</td> <td class="mono"> p.Ser357Tyr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PRPSAP2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/537</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/1</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1165</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1035</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/66</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.0% — 0/2804 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.0%</span> <span class="spark-reads">0/2804</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PRPSAP2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="prrc2c" data-chr="chr1" data-protein="p.arg1004met p.r1004m missense" data-location-key="001:000171540477" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.04687208216619981" data-sccells="0" data-xenium="3.114"> <td><a href="/variant/PRRC2C-chr1-171540477"><strong>PRRC2C</strong></a></td> <td class="mono small">chr1:171540477</td> <td class="mono"> p.Arg1004Met </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PRRC2C — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1405</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>114/2681</td><td class=&#34;tt-pct&#34;>4.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>368/4605</td><td class=&#34;tt-pct&#34;>8.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>20/2019</td><td class=&#34;tt-pct&#34;>1.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.7% — 502/10710 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.8 105.7,17.8 118.0,19.7"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.841540463228952" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.822836644656626" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.73012260559047" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.0%</span> <span class="spark-reads">502/10710</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 11% in tumor (sample variable)">11%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PRRC2C — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="pth1r" data-chr="chr3" data-protein="p.ile237phe p.i237f missense" data-location-key="003:000046898732" data-vaccines="1" data-pipelines="0" data-elispot="0" data-tumor="0.027951524628616106" data-sccells="0" data-xenium="0"> <td><a href="/variant/PTH1R-chr3-46898732"><strong>PTH1R</strong></a></td> <td class="mono small">chr3:46898732</td> <td class="mono"> p.Ile237Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PTH1R — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1240</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>143/2869</td><td class=&#34;tt-pct&#34;>5.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/982</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/25</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.8% — 143/5116 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.6 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.64206706724057" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">5.0%</span> <span class="spark-reads">143/5116</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PTH1R — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (0)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-empty&#34;>none</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (10)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">0/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="pum1" data-chr="chr1" data-protein="p.ser296ile p.s296i missense" data-location-key="001:000030995054" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.04369570939720979" data-sccells="0" data-xenium="0"> <td><a href="/variant/PUM1-chr1-30995054"><strong>PUM1</strong></a></td> <td class="mono small">chr1:30995054</td> <td class="mono"> p.Ser296Ile </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>PUM1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1363</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>160/1066</td><td class=&#34;tt-pct&#34;>15.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>6/1113</td><td class=&#34;tt-pct&#34;>0.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/257</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.4% — 166/3799 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.9 105.7,19.9 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.910825821292015" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.85313141258414" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.0%</span> <span class="spark-reads">166/3799</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>PUM1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="rabep1" data-chr="chr17" data-protein="p.arg300gln p.r300q missense" data-location-key="017:000005350565" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.002607561929595828" data-sccells="0" data-xenium="0"> <td><a href="/variant/RABEP1-chr17-5350565"><strong>RABEP1</strong></a></td> <td class="mono small">chr17:5350565</td> <td class="mono"> p.Arg300Gln </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>RABEP1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1030</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1302</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>5/1775</td><td class=&#34;tt-pct&#34;>0.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>7/495</td><td class=&#34;tt-pct&#34;>1.4%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.3% — 12/4602 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,20.0 105.7,19.9 118.0,19.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.92325599164608" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.614729574223244" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">1.4%</span> <span class="spark-reads">12/4602</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>RABEP1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="rcsd1" data-chr="chr1" data-protein="p.arg45trp p.r45w missense" data-location-key="001:000167685445" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.0045961275180911405" data-sccells="0" data-xenium="0"> <td><a href="/variant/RCSD1-chr1-167685445"><strong>RCSD1</strong></a></td> <td class="mono small">chr1:167685445</td> <td class="mono"> p.Arg45Trp </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>RCSD1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/350</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>11/1968</td><td class=&#34;tt-pct&#34;>0.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>36/5215</td><td class=&#34;tt-pct&#34;>0.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/2693</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.5% — 47/10226 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.8 105.7,19.8 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.847720857407488" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.811929352490296" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">0.7%</span> <span class="spark-reads">47/10226</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>RCSD1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="rdh11" data-chr="chr14" data-protein data-location-key="014:000067691154" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.030609339407744875" data-sccells="0" data-xenium="0"> <td><a href="/variant/RDH11-chr14-67691154"><strong>RDH11</strong></a></td> <td class="mono small">chr14:67691154</td> <td class="mono"> <span class="consequence-tag none">—</span> </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>RDH11 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1659</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>75/2516</td><td class=&#34;tt-pct&#34;>3.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>136/1768</td><td class=&#34;tt-pct&#34;>7.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>4/1081</td><td class=&#34;tt-pct&#34;>0.4%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.1% — 215/7024 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.2 105.7,17.9 118.0,19.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.187873917955823" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.904298233412156" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.899189184215942" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.7%</span> <span class="spark-reads">215/7024</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>RDH11 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="reck" data-chr="chr9" data-protein="p.glu221asp p.e221d missense" data-location-key="009:000036087719" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.04592525889239082" data-sccells="1" data-xenium="0"> <td><a href="/variant/RECK-chr9-36087719"><strong>RECK</strong></a></td> <td class="mono small">chr9:36087719</td> <td class="mono"> p.Glu221Asp </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>RECK — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/544</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>102/989</td><td class=&#34;tt-pct&#34;>10.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/614</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/74</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.6% — 102/2221 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.2 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.1901915647164" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">10.3%</span> <span class="spark-reads">102/2221</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="1 single cells carry this variant">1</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>RECK — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="rnf157" data-chr="chr17" data-protein="p.pro291ser p.p291s missense" data-location-key="017:000076161924" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.028504490433424443" data-sccells="0" data-xenium="0"> <td><a href="/variant/RNF157-chr17-76161924"><strong>RNF157</strong></a></td> <td class="mono small">chr17:76161924</td> <td class="mono"> p.Pro291Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>RNF157 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/945</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>73/1056</td><td class=&#34;tt-pct&#34;>6.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/535</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/25</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.9% — 73/2561 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.1 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.116646802564524" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.9%</span> <span class="spark-reads">73/2561</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>RNF157 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="rnf213" data-chr="chr17" data-protein="p.ile1070ile (del leu) p.i1070i (del l) inframe del" data-location-key="017:000080327830" data-vaccines="1" data-pipelines="4" data-elispot="0" data-tumor="0.04008983717012914" data-sccells="0" data-xenium="3.115"> <td><a href="/variant/RNF213-chr17-80327830"><strong>RNF213</strong></a></td> <td class="mono small">chr17:80327830</td> <td class="mono"> p.Ile1070Ile (del Leu) </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>RNF213 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1168</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>269/2115</td><td class=&#34;tt-pct&#34;>12.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>86/4521</td><td class=&#34;tt-pct&#34;>1.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/1101</td><td class=&#34;tt-pct&#34;>0.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.0% — 357/8905 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.5 105.7,19.5 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.534908237466816" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.481753024763282" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.950510221679124" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.7%</span> <span class="spark-reads">357/8905</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 12% in tumor (sample variable)">12%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>RNF213 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">4/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="robo2" data-chr="chr3" data-protein="p.asn1080lys p.n1080k missense" data-location-key="003:000077607853" data-vaccines="1" data-pipelines="7" data-elispot="0" data-tumor="0.1858719646799117" data-sccells="26" data-xenium="3.729"> <td><a href="/variant/ROBO2-chr3-77607853"><strong>ROBO2</strong></a></td> <td class="mono small">chr3:77607853</td> <td class="mono"> p.Asn1080Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ROBO2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>21/900</td><td class=&#34;tt-pct&#34;>2.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>249/769</td><td class=&#34;tt-pct&#34;>32.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>148/593</td><td class=&#34;tt-pct&#34;>25.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>3/3</td><td class=&#34;tt-pct&#34;>100.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 18.6% — 421/2265 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.4 76.6,11.2 105.7,13.2"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.364303797468356" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="11.17843092529929" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="13.200454976534555" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">32.4%</span> <span class="spark-reads">421/2265</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="26 single cells carry this variant">26</span> </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 73% in tumor (sample variable)">73%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ROBO2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">7/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="ros1" data-chr="chr6" data-protein="p.ser2223tyr p.s2223y missense" data-location-key="006:000117301021" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.021032504780114723" data-sccells="0" data-xenium="0"> <td><a href="/variant/ROS1-chr6-117301021"><strong>ROS1</strong></a></td> <td class="mono small">chr6:117301021</td> <td class="mono"> p.Ser2223Tyr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ROS1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/283</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>22/319</td><td class=&#34;tt-pct&#34;>6.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/444</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.1% — 22/1046 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.1 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.121094967886762" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.9%</span> <span class="spark-reads">22/1046</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ROS1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="rp1l1" data-chr="chr8" data-protein="p.leu792val p.l792v missense" data-location-key="008:000010611724" data-vaccines="0" data-pipelines="4" data-elispot="0" data-tumor="0.17164179104477612" data-sccells="0" data-xenium="0"> <td><a href="/variant/RP1L1-chr8-10611724"><strong>RP1L1</strong></a></td> <td class="mono small">chr8:10611724</td> <td class="mono"> p.Leu792Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>RP1L1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>99/438</td><td class=&#34;tt-pct&#34;>22.6%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>87/420</td><td class=&#34;tt-pct&#34;>20.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>21/348</td><td class=&#34;tt-pct&#34;>6.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 17.2% — 207/1206 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,13.8 76.6,14.4 105.7,18.4"></polyline> <circle class="spark-dot tumor" cx="2" cy="13.842081795437094" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.356574528545597" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.355958096900917" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">22.6%</span> <span class="spark-reads">207/1206</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>RP1L1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">4/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="samd9" data-chr="chr7" data-protein="p.gly1496glu p.g1496e missense" data-location-key="007:000093101611" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.008426415833823241" data-sccells="0" data-xenium="0"> <td><a href="/variant/SAMD9-chr7-93101611"><strong>SAMD9</strong></a></td> <td class="mono small">chr7:93101611</td> <td class="mono"> p.Gly1496Glu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SAMD9 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>39/1312</td><td class=&#34;tt-pct&#34;>3.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>4/1990</td><td class=&#34;tt-pct&#34;>0.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/882</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/919</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.8% — 43/5103 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.2 76.6,19.9 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.19015183257619" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.945237943787653" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">3.0%</span> <span class="spark-reads">43/5103</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SAMD9 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="serpinb10" data-chr="chr18" data-protein="p.gln10his p.q10h missense" data-location-key="018:000063915540" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.09207459207459208" data-sccells="0" data-xenium="0"> <td><a href="/variant/SERPINB10-chr18-63915540"><strong>SERPINB10</strong></a></td> <td class="mono small">chr18:63915540</td> <td class="mono"> p.Gln10His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SERPINB10 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/625</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>146/666</td><td class=&#34;tt-pct&#34;>21.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>12/425</td><td class=&#34;tt-pct&#34;>2.8%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 9.2% — 158/1716 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,14.0 105.7,19.2"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.027564635159571" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.230754175087757" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">21.9%</span> <span class="spark-reads">158/1716</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SERPINB10 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="shc4" data-chr="chr15" data-protein="p.gly488glu p.g488e missense" data-location-key="015:000048843429" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.027127003699136867" data-sccells="0" data-xenium="0"> <td><a href="/variant/SHC4-chr15-48843429"><strong>SHC4</strong></a></td> <td class="mono small">chr15:48843429</td> <td class="mono"> p.Gly488Glu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SHC4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/546</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>44/587</td><td class=&#34;tt-pct&#34;>7.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/474</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/15</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.7% — 44/1622 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.0 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.957851089457844" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.5%</span> <span class="spark-reads">44/1622</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SHC4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="slamf7" data-chr="chr1" data-protein="p.pro154leu p.p154l missense" data-location-key="001:000160751438" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.009482827316917682" data-sccells="0" data-xenium="0"> <td><a href="/variant/SLAMF7-chr1-160751438"><strong>SLAMF7</strong></a></td> <td class="mono small">chr1:160751438</td> <td class="mono"> p.Pro154Leu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SLAMF7 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/847</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>105/1279</td><td class=&#34;tt-pct&#34;>8.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>6/7132</td><td class=&#34;tt-pct&#34;>0.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>8/3291</td><td class=&#34;tt-pct&#34;>0.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.9% — 119/12549 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.8 105.7,20.0 118.0,19.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.763383181084905" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.97708009845852" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.93377302226523" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.2%</span> <span class="spark-reads">119/12549</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SLAMF7 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="slc17a4" data-chr="chr6" data-protein="p.trp89arg p.w89r missense" data-location-key="006:000025769158" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.037654320987654324" data-sccells="0" data-xenium="0"> <td><a href="/variant/SLC17A4-chr6-25769158"><strong>SLC17A4</strong></a></td> <td class="mono small">chr6:25769158</td> <td class="mono"> p.Trp89Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SLC17A4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/387</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>61/762</td><td class=&#34;tt-pct&#34;>8.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/471</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.8% — 61/1620 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,17.8 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="17.819040025060158" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.0%</span> <span class="spark-reads">61/1620</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SLC17A4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="slc25a12" data-chr="chr2" data-protein="p.ile347thr p.i347t missense" data-location-key="002:000171813470" data-vaccines="4" data-pipelines="7" data-elispot="2" data-tumor="0.22096206491982792" data-sccells="22" data-xenium="4.287"> <td><a href="/variant/SLC25A12-chr2-171813470"><strong>SLC25A12</strong></a></td> <td class="mono small">chr2:171813470</td> <td class="mono"> p.Ile347Thr </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SLC25A12 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>168/607</td><td class=&#34;tt-pct&#34;>27.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>306/981</td><td class=&#34;tt-pct&#34;>31.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>88/647</td><td class=&#34;tt-pct&#34;>13.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>3/322</td><td class=&#34;tt-pct&#34;>0.9%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 22.1% — 565/2557 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,12.5 76.6,11.5 105.7,16.3 118.0,19.7"></polyline> <circle class="spark-dot tumor" cx="2" cy="12.45961670802661" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="11.501833203377739" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="16.294462409619022" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.74617276740085" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">31.2%</span> <span class="spark-reads">565/2557</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="22 single cells carry this variant">22</span> </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 29% in tumor (somatic specific)">29%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SLC25A12 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">7/10</span>  </span> </span> </td> <td class="num">4</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="slc35g2" data-chr="chr3" data-protein="p.leu388phe p.l388f missense" data-location-key="003:000136855622" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.027547169811320753" data-sccells="0" data-xenium="0"> <td><a href="/variant/SLC35G2-chr3-136855622"><strong>SLC35G2</strong></a></td> <td class="mono small">chr3:136855622</td> <td class="mono"> p.Leu388Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SLC35G2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/926</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>40/1233</td><td class=&#34;tt-pct&#34;>3.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>33/451</td><td class=&#34;tt-pct&#34;>7.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/40</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.8% — 73/2650 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.1 105.7,18.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.116167949208695" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.00652758787986" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.3%</span> <span class="spark-reads">73/2650</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SLC35G2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="slc7a1" data-chr="chr13" data-protein="p.gly369arg p.g369r missense" data-location-key="013:000029522401" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.03347578347578348" data-sccells="0" data-xenium="0"> <td><a href="/variant/SLC7A1-chr13-29522401"><strong>SLC7A1</strong></a></td> <td class="mono small">chr13:29522401</td> <td class="mono"> p.Gly369Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SLC7A1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1374</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>37/789</td><td class=&#34;tt-pct&#34;>4.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>57/600</td><td class=&#34;tt-pct&#34;>9.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/45</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.3% — 94/2808 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.7 105.7,17.4 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.72239220566698" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.411808318264015" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.5%</span> <span class="spark-reads">94/2808</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SLC7A1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="smc5" data-chr="chr9" data-protein="p.arg371lys p.r371k missense" data-location-key="009:000070298024" data-vaccines="1" data-pipelines="2" data-elispot="0" data-tumor="0.03743470690655833" data-sccells="0" data-xenium="3.165"> <td><a href="/variant/SMC5-chr9-70298024"><strong>SMC5</strong></a></td> <td class="mono small">chr9:70298024</td> <td class="mono"> p.Arg371Lys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SMC5 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1649</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>71/1843</td><td class=&#34;tt-pct&#34;>3.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>172/2147</td><td class=&#34;tt-pct&#34;>8.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>15/1253</td><td class=&#34;tt-pct&#34;>1.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.7% — 258/6892 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,19.0 105.7,17.8 118.0,19.7"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.950443445165178" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.81742470885402" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.67385327654858" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.0%</span> <span class="spark-reads">258/6892</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 17% in tumor (sample variable)">17%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SMC5 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="spag1" data-chr="chr8" data-protein="p.arg406fs p.r406fs frameshift" data-location-key="008:000100213209" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.08412017167381974" data-sccells="0" data-xenium="0"> <td><a href="/variant/SPAG1-chr8-100213209"><strong>SPAG1</strong></a></td> <td class="mono small">chr8:100213209</td> <td class="mono"> p.Arg406fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SPAG1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/148</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>62/424</td><td class=&#34;tt-pct&#34;>14.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>29/532</td><td class=&#34;tt-pct&#34;>5.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>7/61</td><td class=&#34;tt-pct&#34;>11.5%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.4% — 98/1165 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.0 105.7,18.5 118.0,16.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.01618956634481" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.514888033827788" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="16.873625233450923" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">14.6%</span> <span class="spark-reads">98/1165</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SPAG1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="spg11" data-chr="chr15" data-protein="p.ile147val p.i147v missense" data-location-key="015:000044660435" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.03146853146853147" data-sccells="0" data-xenium="4.556"> <td><a href="/variant/SPG11-chr15-44660435"><strong>SPG11</strong></a></td> <td class="mono small">chr15:44660435</td> <td class="mono"> p.Ile147Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SPG11 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/978</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>29/738</td><td class=&#34;tt-pct&#34;>3.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>77/855</td><td class=&#34;tt-pct&#34;>9.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/859</td><td class=&#34;tt-pct&#34;>0.2%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 3.1% — 108/3432 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.9 105.7,17.5 118.0,19.9"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.929431482379922" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.546435709526982" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.93656781614519" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.0%</span> <span class="spark-reads">108/3432</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 56% in tumor (somatic specific)">56%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SPG11 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="srgap3" data-chr="chr3" data-protein="p.gln130ter p.q130* stop gained" data-location-key="003:000009104715" data-vaccines="0" data-pipelines="5" data-elispot="0" data-tumor="0.13436549626762512" data-sccells="0" data-xenium="0"> <td><a href="/variant/SRGAP3-chr3-9104715"><strong>SRGAP3</strong></a></td> <td class="mono small">chr3:9104715</td> <td class="mono"> p.Gln130Ter </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SRGAP3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>248/1279</td><td class=&#34;tt-pct&#34;>19.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>198/1394</td><td class=&#34;tt-pct&#34;>14.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>35/765</td><td class=&#34;tt-pct&#34;>4.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>5/179</td><td class=&#34;tt-pct&#34;>2.8%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 13.4% — 486/3617 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,14.7 76.6,16.1 105.7,18.8 118.0,19.2"></polyline> <circle class="spark-dot tumor" cx="2" cy="14.717324084848158" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.130318258825604" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.753536857781086" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.23899097861335" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">19.4%</span> <span class="spark-reads">486/3617</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SRGAP3 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="styxl2" data-chr="chr1" data-protein="p.pro388ala p.p388a missense" data-location-key="001:000167126143" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.028854080791426217" data-sccells="0" data-xenium="0"> <td><a href="/variant/STYXL2-chr1-167126143"><strong>STYXL2</strong></a></td> <td class="mono small">chr1:167126143</td> <td class="mono"> p.Pro388Ala </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>STYXL2 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/287</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>35/480</td><td class=&#34;tt-pct&#34;>7.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/443</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/3</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 2.9% — 35/1213 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.0 105.7,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.013449367088608" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">7.3%</span> <span class="spark-reads">35/1213</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>STYXL2 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="sult6b1" data-chr="chr2" data-protein="p.? p.? splice donor variant&#38;intron" data-location-key="002:000037171433" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.04754230459307011" data-sccells="0" data-xenium="0"> <td><a href="/variant/SULT6B1-chr2-37171433"><strong>SULT6B1</strong></a></td> <td class="mono small">chr2:37171433</td> <td class="mono"> p.? </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>SULT6B1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/360</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>29/420</td><td class=&#34;tt-pct&#34;>6.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>30/461</td><td class=&#34;tt-pct&#34;>6.5%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.8% — 59/1241 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.1 105.7,18.2"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.118858176181867" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.22706358141159" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">6.9%</span> <span class="spark-reads">59/1241</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>SULT6B1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="taf7l" data-chr="chrx" data-protein="p.glu109fs p.e109fs frameshift" data-location-key="00X:000101286650" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.1400304414003044" data-sccells="0" data-xenium="0"> <td><a href="/variant/TAF7L-chrX-101286650"><strong>TAF7L</strong></a></td> <td class="mono small">chrX:101286650</td> <td class="mono"> p.Glu109fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>TAF7L — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/137</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>56/276</td><td class=&#34;tt-pct&#34;>20.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>36/244</td><td class=&#34;tt-pct&#34;>14.8%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 14.0% — 92/657 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,14.5 105.7,16.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="14.47220693450743" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.980375300151188" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">20.3%</span> <span class="spark-reads">92/657</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>TAF7L — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="tecpr1" data-chr="chr7" data-protein="p.thr259fs p.t259fs frameshift" data-location-key="007:000098241127" data-vaccines="4" data-pipelines="6" data-elispot="2" data-tumor="0.10141093474426807" data-sccells="0" data-xenium="4.382"> <td><a href="/variant/TECPR1-chr7-98241127"><strong>TECPR1</strong></a></td> <td class="mono small">chr7:98241127</td> <td class="mono"> p.Thr259fs </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>TECPR1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>90/736</td><td class=&#34;tt-pct&#34;>12.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>73/611</td><td class=&#34;tt-pct&#34;>11.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>67/916</td><td class=&#34;tt-pct&#34;>7.3%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/5</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 10.1% — 230/2268 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,16.7 76.6,16.7 105.7,18.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="16.668517572136174" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.74497385189548" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.007253014521822" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">12.2%</span> <span class="spark-reads">230/2268</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 38% in tumor (somatic specific)">38%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>TECPR1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">6/10</span>  </span> </span> </td> <td class="num">4</td> <td><span class="pill pill-elispot" title="ELISPOT positive">+</span></td> </tr><tr data-gene="tmem139" data-chr="chr7" data-protein="p.trp61leu p.w61l missense" data-location-key="007:000143286139" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.04426229508196721" data-sccells="0" data-xenium="0"> <td><a href="/variant/TMEM139-chr7-143286139"><strong>TMEM139</strong></a></td> <td class="mono small">chr7:143286139</td> <td class="mono"> p.Trp61Leu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>TMEM139 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>3/747</td><td class=&#34;tt-pct&#34;>0.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>78/490</td><td class=&#34;tt-pct&#34;>15.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/572</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/21</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.4% — 81/1830 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.9 76.6,15.7 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.890585851543605" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.663180425877403" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.9%</span> <span class="spark-reads">81/1830</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>TMEM139 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="tmro" data-chr="chr9" data-protein="p.gly205glu p.g205e missense" data-location-key="009:000097910412" data-vaccines="1" data-pipelines="5" data-elispot="0" data-tumor="0.08806523350630097" data-sccells="22" data-xenium="0"> <td><a href="/variant/TMRO-chr9-97910412"><strong>TMRO</strong></a></td> <td class="mono small">chr9:97910412</td> <td class="mono"> p.Gly205Glu </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>TMRO — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>30/1777</td><td class=&#34;tt-pct&#34;>1.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>416/2746</td><td class=&#34;tt-pct&#34;>15.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>77/1364</td><td class=&#34;tt-pct&#34;>5.6%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>71/858</td><td class=&#34;tt-pct&#34;>8.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.8% — 594/6745 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.5 76.6,15.9 105.7,18.5 118.0,17.7"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.54005419866671" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.872703877018553" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.462025316455698" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="17.745532948064593" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.1%</span> <span class="spark-reads">594/6745</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="22 single cells carry this variant">22</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>TMRO — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="trabd2a" data-chr="chr2" data-protein="p.gln36his p.q36h missense" data-location-key="002:000084880932" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.0649452269170579" data-sccells="5" data-xenium="0"> <td><a href="/variant/TRABD2A-chr2-84880932"><strong>TRABD2A</strong></a></td> <td class="mono small">chr2:84880932</td> <td class="mono"> p.Gln36His </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>TRABD2A — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/270</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>54/474</td><td class=&#34;tt-pct&#34;>11.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>29/400</td><td class=&#34;tt-pct&#34;>7.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/134</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 6.5% — 83/1278 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,16.9 105.7,18.0 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="16.896239155812943" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.02480108499096" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">11.4%</span> <span class="spark-reads">83/1278</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="5 single cells carry this variant">5</span> </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>TRABD2A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="trappc8" data-chr="chr18" data-protein="p.leu614arg p.l614r missense" data-location-key="018:000031874592" data-vaccines="0" data-pipelines="2" data-elispot="0" data-tumor="0.00819672131147541" data-sccells="0" data-xenium="0"> <td><a href="/variant/TRAPPC8-chr18-31874592"><strong>TRAPPC8</strong></a></td> <td class="mono small">chr18:31874592</td> <td class="mono"> p.Leu614Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>TRAPPC8 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>27/985</td><td class=&#34;tt-pct&#34;>2.7%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/1553</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/622</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/134</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.8% — 27/3294 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.3 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.253206781652455" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">2.7%</span> <span class="spark-reads">27/3294</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>TRAPPC8 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ttll6" data-chr="chr17" data-protein="p.gly29arg p.g29r missense" data-location-key="017:000048816988" data-vaccines="0" data-pipelines="3" data-elispot="0" data-tumor="0.09129967776584318" data-sccells="0" data-xenium="0"> <td><a href="/variant/TTLL6-chr17-48816988"><strong>TTLL6</strong></a></td> <td class="mono small">chr17:48816988</td> <td class="mono"> p.Gly29Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>TTLL6 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/200</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>49/317</td><td class=&#34;tt-pct&#34;>15.5%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>36/414</td><td class=&#34;tt-pct&#34;>8.7%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 9.1% — 85/931 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.8 105.7,17.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.788763327077426" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.630945829074612" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.5%</span> <span class="spark-reads">85/931</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>TTLL6 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (3)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (7)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">3/10</span>  </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ush2a" data-chr="chr1" data-protein="p.cys4728phe p.c4728f missense" data-location-key="001:000215560752" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0" data-sccells="0" data-xenium="0"> <td><a href="/variant/USH2A-chr1-215560752"><strong>USH2A</strong></a></td> <td class="mono small">chr1:215560752</td> <td class="mono"> p.Cys4728Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>USH2A — tumor VAF</div><div class=&#34;tt-empty&#34;>No data</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line>   </svg> <span class="spark-stats"> <span class="spark-pct"></span>  </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>USH2A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="ush2a" data-chr="chr1" data-protein="p.cys4728phe p.c4728f missense" data-location-key="001:000215650752" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.06598586017282011" data-sccells="0" data-xenium="0"> <td><a href="/variant/USH2A-chr1-215650752"><strong>USH2A</strong></a></td> <td class="mono small">chr1:215650752</td> <td class="mono"> p.Cys4728Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>USH2A — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>82/579</td><td class=&#34;tt-pct&#34;>14.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>2/694</td><td class=&#34;tt-pct&#34;>0.3%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 6.6% — 84/1273 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,16.1 76.6,19.9"></polyline> <circle class="spark-dot tumor" cx="2" cy="16.1415922570248" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.921486677332442" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">14.2%</span> <span class="spark-reads">84/1273</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>USH2A — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="vps13b" data-chr="chr8" data-protein="p.ser3756phe p.s3756f missense" data-location-key="008:000099861923" data-vaccines="5" data-pipelines="6" data-elispot="0" data-tumor="0.1348122866894198" data-sccells="3" data-xenium="1"> <td><a href="/variant/VPS13B-chr8-99861923"><strong>VPS13B</strong></a></td> <td class="mono small">chr8:99861923</td> <td class="mono"> p.Ser3756Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>VPS13B — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>75/489</td><td class=&#34;tt-pct&#34;>15.3%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>127/718</td><td class=&#34;tt-pct&#34;>17.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>35/508</td><td class=&#34;tt-pct&#34;>6.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/43</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 13.5% — 237/1758 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,15.8 76.6,15.2 105.7,18.1 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="15.821453532877001" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.1810534587235" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="18.12294428386325" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">17.7%</span> <span class="spark-reads">237/1758</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="3 single cells carry this variant">3</span> </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>VPS13B — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (6)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (4)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">6/10</span>  </span> </span> </td> <td class="num">5</td> <td></td> </tr><tr data-gene="vps72" data-chr="chr1" data-protein="p.lys115arg p.k115r missense" data-location-key="001:000151185547" data-vaccines="1" data-pipelines="5" data-elispot="0" data-tumor="0.04297820823244552" data-sccells="0" data-xenium="3.066"> <td><a href="/variant/VPS72-chr1-151185547"><strong>VPS72</strong></a></td> <td class="mono small">chr1:151185547</td> <td class="mono"> p.Lys115Arg </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>VPS72 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/2121</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>140/3402</td><td class=&#34;tt-pct&#34;>4.1%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>265/2888</td><td class=&#34;tt-pct&#34;>9.2%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>21/1501</td><td class=&#34;tt-pct&#34;>1.4%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 4.3% — 426/9912 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,18.9 105.7,17.5 118.0,19.6"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="18.87884267631103" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.500106445327177" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="19.618836387555977" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">9.2%</span> <span class="spark-reads">426/9912</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-vaf sample-variable" title="Xenium mutant probe — pseudo-VAF 7% in tumor (sample variable)">7%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>VPS72 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="vsig4" data-chr="chrx" data-protein="p.ile203val p.i203v missense" data-location-key="00X:000066032555" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.006054716699058155" data-sccells="0" data-xenium="0"> <td><a href="/variant/VSIG4-chrX-66032555"><strong>VSIG4</strong></a></td> <td class="mono small">chrX:66032555</td> <td class="mono"> p.Ile203Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>VSIG4 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>75/844</td><td class=&#34;tt-pct&#34;>8.9%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>3/9263</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/1045</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>3/2226</td><td class=&#34;tt-pct&#34;>0.1%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 0.6% — 81/13378 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,17.6 76.6,20.0 105.7,20.0 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="17.579017508977316" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="19.99117646886571" r="2.4"></circle><circle class="spark-dot tumor zero" cx="105.74647887323944" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="118" cy="19.963282853146033" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">8.9%</span> <span class="spark-reads">81/13378</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>VSIG4 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Tempus 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Tempus 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="wwc1" data-chr="chr5" data-protein="p.val179gly p.v179g missense" data-location-key="005:000168399513" data-vaccines="1" data-pipelines="5" data-elispot="0" data-tumor="0.08145491803278689" data-sccells="0" data-xenium="1"> <td><a href="/variant/WWC1-chr5-168399513"><strong>WWC1</strong></a></td> <td class="mono small">chr5:168399513</td> <td class="mono"> p.Val179Gly </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>WWC1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/659</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2024-01-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>110/718</td><td class=&#34;tt-pct&#34;>15.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>47/571</td><td class=&#34;tt-pct&#34;>8.2%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>2/2</td><td class=&#34;tt-pct&#34;>100.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 8.1% — 159/1952 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.8 105.7,17.8"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.826109294957362" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.75748900282807" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.3%</span> <span class="spark-reads">159/1952</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>WWC1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="zar1" data-chr="chr4" data-protein="p.ala233val p.a233v missense" data-location-key="004:000048490989" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.015193370165745856" data-sccells="0" data-xenium="0"> <td><a href="/variant/ZAR1-chr4-48490989"><strong>ZAR1</strong></a></td> <td class="mono small">chr4:48490989</td> <td class="mono"> p.Ala233Val </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ZAR1 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>7/166</td><td class=&#34;tt-pct&#34;>4.2%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>0/289</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>4/267</td><td class=&#34;tt-pct&#34;>1.5%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/2</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 1.5% — 11/724 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,18.9 76.6,20.0 105.7,19.6"></polyline> <circle class="spark-dot tumor" cx="2" cy="18.85115144120787" r="2.4"></circle><circle class="spark-dot tumor zero" cx="76.61032863849765" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="19.591848345084017" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">4.2%</span> <span class="spark-reads">11/724</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col">  </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ZAR1 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (1)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Natera 2022</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">Natera 2022</span> </span> </span> </td> <td class="num"></td> <td></td> </tr><tr data-gene="znf436" data-chr="chr1" data-protein="p.ser207cys p.s207c missense" data-location-key="001:000023362762" data-vaccines="2" data-pipelines="8" data-elispot="0" data-tumor="0.4855371900826446" data-sccells="3" data-xenium="4.936"> <td><a href="/variant/ZNF436-chr1-23362762"><strong>ZNF436</strong></a></td> <td class="mono small">chr1:23362762</td> <td class="mono"> p.Ser207Cys </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ZNF436 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>801/1545</td><td class=&#34;tt-pct&#34;>51.8%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>783/1355</td><td class=&#34;tt-pct&#34;>57.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>59/458</td><td class=&#34;tt-pct&#34;>12.9%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>2/30</td><td class=&#34;tt-pct&#34;>6.7%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 48.6% — 1645/3388 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,5.9 76.6,4.3 105.7,16.5 118.0,18.2"></polyline> <circle class="spark-dot tumor" cx="2" cy="5.875377025579807" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="4.256717134983289" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="16.49038590617276" r="2.4"></circle><circle class="spark-dot tumor" cx="118" cy="18.18372513562387" r="2.4"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">57.8%</span> <span class="spark-reads">1645/3388</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="3 single cells carry this variant">3</span> </td> <td class="num xenium-col"> <span class="xen-vaf somatic-specific" title="Xenium mutant probe — pseudo-VAF 94% in tumor (somatic specific)">94%</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ZNF436 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>LENS 2022</li><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>Natera 2022</li><li class=&#34;pl-yes&#34;>Tempus 2022</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">8/10</span>  </span> </span> </td> <td class="num">2</td> <td></td> </tr><tr data-gene="znf674" data-chr="chrx" data-protein="p.leu182phe p.l182f missense" data-location-key="00X:000046501045" data-vaccines="1" data-pipelines="5" data-elispot="0" data-tumor="0.14076050700466977" data-sccells="2" data-xenium="1"> <td><a href="/variant/ZNF674-chrX-46501045"><strong>ZNF674</strong></a></td> <td class="mono small">chrX:46501045</td> <td class="mono"> p.Leu182Phe </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ZNF674 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>8/592</td><td class=&#34;tt-pct&#34;>1.4%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>162/617</td><td class=&#34;tt-pct&#34;>26.3%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>41/259</td><td class=&#34;tt-pct&#34;>15.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/31</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 14.1% — 211/1499 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,19.6 76.6,12.8 105.7,15.7 118.0,20.0"></polyline> <circle class="spark-dot tumor" cx="2" cy="19.631836176139974" r="2.4"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="12.846761879361434" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="15.68722377763969" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">26.3%</span> <span class="spark-reads">211/1499</span> </span> </span> </td> <td class="num sccells-col"> <span class="sc-count" title="2 single cells carry this variant">2</span> </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ZNF674 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>Mutect2 2025</li><li class=&#34;pl-yes&#34;>pVACtools 2025</li><li class=&#34;pl-yes&#34;>oncoanalyser</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (5)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">5/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="znf764" data-chr="chr16" data-protein="p.ser63asn p.s63n missense" data-location-key="016:000030557995" data-vaccines="1" data-pipelines="2" data-elispot="0" data-tumor="0.07179487179487179" data-sccells="0" data-xenium="1"> <td><a href="/variant/ZNF764-chr16-30557995"><strong>ZNF764</strong></a></td> <td class="mono small">chr16:30557995</td> <td class="mono"> p.Ser63Asn </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ZNF764 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/513</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>118/764</td><td class=&#34;tt-pct&#34;>15.4%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>106/1221</td><td class=&#34;tt-pct&#34;>8.7%</td></tr><tr><td class=&#34;tt-date&#34;>2025-04-01</td><td class=&#34;tt-reads&#34;>0/622</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div class=&#34;tt-mean&#34;>weighted 7.2% — 224/3120 reads</div>"> <svg class="spark tumor" width="120" height="22" viewBox="0 0 120 22"> <line class="spark-baseline" x1="2" x2="118" y1="20" y2="20"></line> <polyline class="spark-line tumor" points="2.0,20.0 76.6,15.8 105.7,17.6 118.0,20.0"></polyline> <circle class="spark-dot tumor zero" cx="2" cy="20" r="1"></circle><circle class="spark-dot tumor" cx="76.61032863849765" cy="15.79213807598724" r="2.4"></circle><circle class="spark-dot tumor" cx="105.74647887323944" cy="17.634826343687102" r="2.4"></circle><circle class="spark-dot tumor zero" cx="118" cy="20" r="1"></circle> </svg> <span class="spark-stats"> <span class="spark-pct">15.4%</span> <span class="spark-reads">224/3120</span> </span> </span> </td> <td class="num sccells-col">  </td> <td class="num xenium-col"> <span class="xen-probe" title="Xenium probe pair present; no mutant signal above the noise floor">probe</span> </td> <td class="num pipelines-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title pipelines&#34;>ZNF764 — pipelines</div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Detected (2)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-yes&#34;>Mutect2 2024</li><li class=&#34;pl-yes&#34;>DRAGEN</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (8)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>oncoanalyser</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">2/10</span>  </span> </span> </td> <td class="num">1</td> <td></td> </tr><tr data-gene="znrf3" data-chr="chr22" data-protein="p.gly578ser p.g578s missense" data-location-key="022:000029049913" data-vaccines="0" data-pipelines="1" data-elispot="0" data-tumor="0.002205071664829107" data-sccells="0" data-xenium="0"> <td><a href="/variant/ZNRF3-chr22-29049913"><strong>ZNRF3</strong></a></td> <td class="mono small">chr22:29049913</td> <td class="mono"> p.Gly578Ser </td> <td class="spark-col"> <span class="spark-wrap" data-tip="<div class=&#34;tt-title tumor&#34;>ZNRF3 — tumor VAF</div><table class=&#34;tt-table&#34;><tr><th class=&#34;tt-date&#34;></th><th class=&#34;tt-reads&#34;>alt/dp</th><th class=&#34;tt-pct&#34;>VAF</th></tr><tr><td class=&#34;tt-date&#34;>2022-12-01</td><td class=&#34;tt-reads&#34;>0/1463</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr><td class=&#34;tt-date&#34;>2024-06-01</td><td class=&#34;tt-reads&#34;>6/768</td><td class=&#34;tt-pct&#34;>0.8%</td></tr><tr><td class=&#34;tt-date&#34;>2025-01-01</td><td class=&#34;tt-reads&#34;>0/487</td><td class=&#34;tt-pct&#34;>0.0%</td></tr><tr class=&#34;tt-row-dropped&#34;><td class=&#34;tt-date&#34;><span class=&#34;tt-drop-marker&#34; title=&#34;not drawn — depth below 20×&#34;>·</span>2025-04-01</td><td class=&#34;tt-reads&#34;>0/3</td><td class=&#34;tt-pct&#34;>0.0%</td></tr></table><div 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class=&#34;pl-yes&#34;>oncoanalyser</li></ul></div><div class=&#34;tt-pl-section&#34;><div class=&#34;tt-pl-label&#34;>Not detected (9)</div><ul class=&#34;tt-pl-list&#34;><li class=&#34;pl-no&#34;>LENS 2022</li><li class=&#34;pl-no&#34;>LENS 2024</li><li class=&#34;pl-no&#34;>Mutect2 2024</li><li class=&#34;pl-no&#34;>Mutect2 2025</li><li class=&#34;pl-no&#34;>pVACtools 2025</li><li class=&#34;pl-no&#34;>Natera 2022</li><li class=&#34;pl-no&#34;>Tempus 2022</li><li class=&#34;pl-no&#34;>BG 2024</li><li class=&#34;pl-no&#34;>DRAGEN</li></ul></div>"> <span class="pipelines-stack"> <span class="pipelines-count">1/10</span> <span class="sole-pipeline">oncoanalyser</span> </span> </span> </td> <td class="num"></td> <td></td> </tr> </tbody> </table> </div> </div> <div class="sparkline-tooltip" id="sparkline-tooltip" aria-hidden="true"></div> <script>
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