@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:a94fbe500eef7d3f40be1227cc83cb74
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:ec8c010725b368518d2d2976f25889a7
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:721711b9cfb8d8854b3b917777c23aca
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:524d6c8055708a3691dc0e6d0a99e866
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:de70920d7340305c41797b148cc37b55
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:1caa20d9190c5b1b8ce5e8524036198a
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:824313db5a9cc13c6e6fbdfc4c097937
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:fe1b282f71d731c840d591f2fd394549
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:4e6f4a1c756b8a1b291ab87aa2c2c8cf
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:8c7d48b510424cfd26ba5a1422c0afa1
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:f1cc92c4623dfddee956d14019675775
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:dae8a4c6147f620cdefa2835f39d92e1
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:d57249a1dffd0469afdc588f95ad07c0
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:3fe2e753bc5e3efc9a64c90bbaac87ac
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
