@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:651d7348d3f7ec94e86af2aca2d1eb38
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:954127ef0f5ee08ec505e83dacbbc8e5
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:570a627ce4025040c7728216f276dae7
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:ed5e32de7bb8f3cecbd312debe331fd3
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:5150c6b05d8b8cb3de41c95754cf75b5
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:bbd1b37e71a4d00fbccad37f93f18cf8
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:fa2fda0720ebcecb1f228a5c04f00497
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:18f3cdc1aad2cc1e74a3be234a8078cd
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:172bcccdfc8920696229a075697285e0
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:bced447e4f678c6bd8edd6c8e853a774
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:884ce32a1cd597be0ab9ac0cc81f9e5e
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:c87660224adbe3d6f4983f783e7ea224
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:4593e88014bff0b6f5b0391616b684e0
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:020c534836216f1d24540eafd5266339
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
