@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:d7dbcc1e8867c54eeac97c1a727a1336
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:1866e9f9468d7cc40196096f5d78299a
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:251c4b471b261d9aee7775a4dc9e935f
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:d3969ce2dbafb28a56bcad8ae97845ff
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:a30eb9ad77bddcf3ce7bbffe0084b48a
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:fa64e0112ea6566843cadfcd0d8bf51c
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:fee1a8701b92efd316ad07300e4d3188
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:7979122cab88e011bfbeb2d8687b6c6b
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:a172fb082b73c43b2f2cfc44fc19bc86
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:043fe1a2bb3f4c6d6a6e5a8108e232a3
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:e733dc9a787b14830a930a9fed8308bd
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:a419eb2e95250680f469b9d928fbe018
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:07b7766827d76fa6099d4b890c0c393b
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:044a4a127ab231eca480a522ff9bc20e
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
