@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:1b579feedd97b706a4a107cbbd1e8eac
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:0025f01a940f3c76ef89dc7585a0b048
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:73ed8c29323f1d1379125b36bcf02c5d
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:b291a8fed774d7e840997f6de97b6848
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:85c5233640b486708451422c85ee2151
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:20cbfc3cc8645a9c599e9e77690816cb
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:1fc947f1b50d10e2f4272fdc11cbd993
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:8af4b336f2d06dc154aaceb70cfbf25e
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:6b25752d6223486c013c95c51d66b87a
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:67bbddf1c0b92cd9f800a72345aecfc5
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:c3b74afacbf6f7fa7959497ddcd09db0
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:8d5a2596677413c73ecbf03cc58e7904
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:f9d3c5da03de194327d6019ce96ee4eb
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:2bc586220bfe1bd8216b77bf83986fc5
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
