@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:2525366abefd1e3e5614015f1da3b0f4
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:c4e2d917bc462e52ad940399bd103451
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:8cc9b04b07ee7f7a75681feab73118f0
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:3a8ef2a1632d7c72c244c933bf95f529
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:6b14de198f1fce899eef2444457a0444
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:3bf86dd384a2270c35f0bcd248f23bd8
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:ca85183bc76a050a71ced42cf51892d1
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:520f40434f3fd6fb7b9d887492c6086a
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:accec812f08c0feae74e8c04c1ef6e45
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:084197b236f332a403783b829d08d6cc
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:dc625dc1dfcfc39be1b38eaaa6ee06c7
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:c01fc2988adbfa57e5b1f681b7807265
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:a7d336694c83afb1d95dd07d2b53def5
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:3fb98f734bd4f2a337b3a802bc2a0136
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
