@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:0da4c69f7f7315cbbab02392dca0d965
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:9179829a2b429e04a6b436b4a1dee2e9
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:e6fa477558e1ebe55955b40803a15f09
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:e308076d970da94588432c5d2e84c30c
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:95168a6961bf319d26a3f76351c4ef27
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:9ce962bb215a3797c2cf4099ce7c4fbf
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:e4d240ae147533796015599ae7d996ca
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:ab5862dbe2fd32ced195e41ce424c8d6
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:70284f1cca61a43b746d1e50e39cc59e
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:de0bb781fdbaac000ff34436f2c1a402
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:fc12097cac3f9c6de9890f430e9f5c07
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:de60b1ffb13af466951ea114ed8e8356
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:b748bc45892bd149850f00c2e7a3d30e
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:73413e0fcf38845fa157f47d1b700077
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
