@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:90f22573ea6b13f5625a0cfddbb1c79a
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:2c2323d25a4e7667ce1dd5ee53b42971
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:a32a1a6e8386c981a0d2df0115370f79
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:e5cbdd592619d025b750c8b1283352a4
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:e10c2db7de19ddb9942f8a7c87654778
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:3c485370eb760d1c1b13c39bf3820f8e
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:89b974b6e1e56048d794fcd3fc6c4be6
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:c0f56d9f26aca131d1e98298df5e571b
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:e2242a78aaff61e7722533dabec3b5f0
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:996d8130ce453a8ab04d5ead06bbd34f
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:8aecb7e7e8c16c1a3ef2e78a1a8e9440
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:c2a948b48c2df71af0ac64532742347a
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:0147686c17d4c1c0481ec4ee556d72a9
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:02d50ac4cbc59e78e653ee9ef358c8d2
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
